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BioC 3.4: BUILD BIN report for systemPipeR on tokay1

This page was generated on 2017-04-15 16:19:08 -0400 (Sat, 15 Apr 2017).

Package 1224/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeR 1.8.1
Thomas Girke
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/systemPipeR
Last Changed Rev: 122897 / Revision: 128728
Last Changed Date: 2016-10-20 20:22:17 -0400 (Thu, 20 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: systemPipeR
Version: 1.8.1
Command: cd systemPipeR.buildbin-libdir/systemPipeR && zip -r ../../systemPipeR_1.8.1.zip . & cd ../..
StartedAt: 2017-04-15 02:25:55 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 02:26:26 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 31.5 seconds
RetCode: 0
Status:  OK  
PackageFile: systemPipeR_1.8.1.zip
PackageFileSize: 8.076 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd systemPipeR.buildbin-libdir/systemPipeR && zip -r ../../systemPipeR_1.8.1.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (284 bytes security) (deflated 7%)
  adding: DESCRIPTION (284 bytes security) (deflated 46%)
  adding: doc/ (324 bytes security) (stored 0%)
  adding: doc/index.html (284 bytes security) (deflated 80%)
  adding: doc/systemPipeChIPseq.pdf (284 bytes security) (deflated 11%)
  adding: doc/systemPipeChIPseq.R (284 bytes security) (deflated 73%)
  adding: doc/systemPipeChIPseq.Rnw (284 bytes security) (deflated 65%)
  adding: doc/systemPipeR.html (284 bytes security) (deflated 35%)
  adding: doc/systemPipeR.R (284 bytes security) (deflated 77%)
  adding: doc/systemPipeR.Rmd (284 bytes security) (deflated 71%)
  adding: doc/systemPipeRIBOseq.pdf (284 bytes security) (deflated 16%)
  adding: doc/systemPipeRIBOseq.R (284 bytes security) (deflated 76%)
  adding: doc/systemPipeRIBOseq.Rnw (284 bytes security) (deflated 67%)
  adding: doc/systemPipeRNAseq.pdf (284 bytes security) (deflated 14%)
  adding: doc/systemPipeRNAseq.R (284 bytes security) (deflated 70%)
  adding: doc/systemPipeRNAseq.Rnw (284 bytes security) (deflated 63%)
  adding: doc/systemPipeVARseq.pdf (284 bytes security) (deflated 12%)
  adding: doc/systemPipeVARseq.R (284 bytes security) (deflated 81%)
  adding: doc/systemPipeVARseq.Rnw (284 bytes security) (deflated 70%)
  adding: extdata/ (324 bytes security) (stored 0%)
  adding: extdata/.BatchJobs.R (284 bytes security) (deflated 19%)
  adding: extdata/alignStats.xls (284 bytes security) (deflated 62%)
  adding: extdata/annotate_peaks.param (284 bytes security) (deflated 44%)
  adding: extdata/annotate_vars.param (284 bytes security) (deflated 43%)
  adding: extdata/bowtiePE.param (284 bytes security) (deflated 42%)
  adding: extdata/bowtieSE.param (284 bytes security) (deflated 41%)
  adding: extdata/bwa.param (284 bytes security) (deflated 43%)
  adding: extdata/countDFeByg.xls (284 bytes security) (deflated 61%)
  adding: extdata/count_rangesets.param (284 bytes security) (deflated 44%)
  adding: extdata/custom_Fct.R (284 bytes security) (deflated 58%)
  adding: extdata/filter_gatk.param (284 bytes security) (deflated 43%)
  adding: extdata/filter_sambcf.param (284 bytes security) (deflated 43%)
  adding: extdata/filter_vartools.param (284 bytes security) (deflated 43%)
  adding: extdata/gatk.param (284 bytes security) (deflated 50%)
  adding: extdata/gatk_run.sh (284 bytes security) (deflated 61%)
  adding: extdata/gsnap.param (284 bytes security) (deflated 43%)
  adding: extdata/macs2.param (284 bytes security) (deflated 45%)
  adding: extdata/macs2_noinput.param (284 bytes security) (deflated 45%)
  adding: extdata/Makefile (284 bytes security) (deflated 62%)
  adding: extdata/rpkmDFeByg.xls (284 bytes security) (deflated 49%)
  adding: extdata/rsubread.param (284 bytes security) (deflated 43%)
  adding: extdata/rundiff.param (284 bytes security) (deflated 43%)
  adding: extdata/sambcf.param (284 bytes security) (deflated 49%)
  adding: extdata/sambcf_run.sh (284 bytes security) (deflated 54%)
  adding: extdata/slides/ (324 bytes security) (stored 0%)
  adding: extdata/slides/bibtex.bib (284 bytes security) (deflated 69%)
  adding: extdata/slides/images/ (324 bytes security) (stored 0%)
  adding: extdata/slides/images/SystemPipeR_Workflow.png (284 bytes security) (deflated 1%)
  adding: extdata/slides/logo.png (284 bytes security) (deflated 1%)
  adding: extdata/slides/systemPipeRslides.html (284 bytes security) (deflated 43%)
  adding: extdata/slides/systemPipeRslides.R (284 bytes security) (deflated 70%)
  adding: extdata/slides/systemPipeRslides.Rmd (284 bytes security) (deflated 64%)
  adding: extdata/slides/systemPipeRslides_cache/ (324 bytes security) (stored 0%)
  adding: extdata/slides/systemPipeRslides_cache/html/ (324 bytes security) (stored 0%)
  adding: extdata/targets.txt (284 bytes security) (deflated 65%)
  adding: extdata/targetsPE.txt (284 bytes security) (deflated 70%)
  adding: extdata/targetsPE_chip.txt (284 bytes security) (deflated 69%)
  adding: extdata/targets_chip.txt (284 bytes security) (deflated 64%)
  adding: extdata/tophat.param (284 bytes security) (deflated 42%)
  adding: extdata/torque.tmpl (284 bytes security) (deflated 49%)
  adding: extdata/trim.param (284 bytes security) (deflated 43%)
  adding: extdata/trimPE.param (284 bytes security) (deflated 49%)
  adding: extdata/vartools.param (284 bytes security) (deflated 43%)
  adding: extdata/vignette_archive/ (324 bytes security) (stored 0%)
  adding: extdata/vignette_archive/systemPipeR.pdf (284 bytes security) (deflated 8%)
  adding: extdata/vignette_archive/systemPipeR.R (284 bytes security) (deflated 74%)
  adding: extdata/vignette_archive/systemPipeR.Rnw (284 bytes security) (deflated 68%)
  adding: help/ (324 bytes security) (stored 0%)
  adding: help/aliases.rds (284 bytes security) (stored 0%)
  adding: help/AnIndex (284 bytes security) (deflated 78%)
  adding: help/paths.rds (284 bytes security) (stored 0%)
  adding: help/systemPipeR.rdb (284 bytes security) (deflated 1%)
  adding: help/systemPipeR.rdx (284 bytes security) (stored 0%)
  adding: html/ (324 bytes security) (stored 0%)
  adding: html/00Index.html (284 bytes security) (deflated 87%)
  adding: html/R.css (284 bytes security) (deflated 75%)
  adding: INDEX (284 bytes security) (deflated 60%)
  adding: MD5 (284 bytes security) (deflated 52%)
  adding: Meta/ (324 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (284 bytes security) (stored 0%)
  adding: Meta/links.rds (284 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (284 bytes security) (stored 0%)
  adding: Meta/package.rds (284 bytes security) (stored 0%)
  adding: Meta/Rd.rds (284 bytes security) (stored 0%)
  adding: Meta/vignette.rds (284 bytes security) (stored 0%)
  adding: NAMESPACE (284 bytes security) (deflated 50%)
  adding: NEWS (284 bytes security) (deflated 54%)
  adding: R/ (324 bytes security) (stored 0%)
  adding: R/systemPipeR (284 bytes security) (deflated 41%)
  adding: R/systemPipeR.rdb (284 bytes security) (deflated 16%)
  adding: R/systemPipeR.rdx (284 bytes security) (deflated 1%)
  adding: unitTests/ (324 bytes security) (stored 0%)
  adding: unitTests/SRR446027_1.fastq (284 bytes security) (stored 0%)
  adding: unitTests/SRR446028_1.fastq (284 bytes security) (stored 0%)
  adding: unitTests/SRR446029_1.fastq (284 bytes security) (stored 0%)
  adding: unitTests/SRR446030_1.fastq (284 bytes security) (stored 0%)
  adding: unitTests/targets.txt (284 bytes security) (deflated 39%)
  adding: unitTests/test_classes.R (284 bytes security) (deflated 32%)
  adding: unitTests/tophat.param (284 bytes security) (deflated 42%)