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BioC 3.4: BUILD report for msa on tokay1

This page was generated on 2017-04-15 16:19:58 -0400 (Sat, 15 Apr 2017).

Package 804/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
msa 1.6.0
Ulrich Bodenhofer
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/msa
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK [ OK ] OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: msa
Version: 1.6.0
Command: chmod a+r msa -R && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data msa
StartedAt: 2017-04-14 20:06:43 -0400 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 20:13:54 -0400 (Fri, 14 Apr 2017)
EllapsedTime: 431.5 seconds
RetCode: 0
Status:  OK  
PackageFile: msa_1.6.0.tar.gz
PackageFileSize: 3.588 MiB

Command output

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###
### Running command:
###
###   chmod a+r msa -R && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data msa
###
##############################################################################
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* checking for file 'msa/DESCRIPTION' ... OK
* preparing 'msa':
* checking DESCRIPTION meta-information ... OK
* cleaning src
Warning: running command '"make" -f "C:/Users/biocbuild/bbs-3.4-bioc/R/share/make/clean.mk" -f Makevars.win clean' had status 2
* running 'cleanup.win'
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
Warning: running command '"make" -f "C:/Users/biocbuild/bbs-3.4-bioc/R/share/make/clean.mk" -f Makevars.win clean' had status 2
* running 'cleanup.win'
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'msa_1.6.0.tar.gz'
Warning: file 'msa/cleanup' did not have execute permissions: corrected
Warning: file 'msa/src/ClustalOmega/configure' did not have execute permissions: corrected
Warning: file 'msa/src/ClustalW/configure' did not have execute permissions: corrected
Warning: file 'msa/src/gc-7.2/configure' did not have execute permissions: corrected
Warning: file 'msa/src/gc-7.2/libatomic_ops/configure' did not have execute permissions: corrected