Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K [L] M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: INSTALL report for limma on tokay1

This page was generated on 2017-04-15 16:14:19 -0400 (Sat, 15 Apr 2017).

Package 672/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
limma 3.30.13
Gordon Smyth
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/limma
Last Changed Rev: 127371 / Revision: 128728
Last Changed Date: 2017-03-13 23:30:52 -0400 (Mon, 13 Mar 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: limma
Version: 3.30.13
Command: rm -rf limma.buildbin-libdir && mkdir limma.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.4/bioc/src/contrib/limma_3.30.13.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=limma.buildbin-libdir --merge-multiarch limma_3.30.13.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL limma_3.30.13.zip && rm limma_3.30.13.tar.gz limma_3.30.13.zip
StartedAt: 2017-04-14 18:02:49 -0400 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 18:03:17 -0400 (Fri, 14 Apr 2017)
EllapsedTime: 28.3 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf limma.buildbin-libdir && mkdir limma.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.4/bioc/src/contrib/limma_3.30.13.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=limma.buildbin-libdir --merge-multiarch limma_3.30.13.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL limma_3.30.13.zip  && rm limma_3.30.13.tar.gz limma_3.30.13.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1402k  100 1402k    0     0  10.7M      0 --:--:-- --:--:-- --:--:-- 10.8M

install for i386

* installing *source* package 'limma' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c normexp.c -o normexp.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c weighted_lowess.c -o weighted_lowess.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o limma.dll tmp.def normexp.o weighted_lowess.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.4-bioc/meat/limma.buildbin-libdir/limma/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'intro.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'limma' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c normexp.c -o normexp.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c weighted_lowess.c -o weighted_lowess.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o limma.dll tmp.def normexp.o weighted_lowess.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.4-bioc/meat/limma.buildbin-libdir/limma/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'limma' as limma_3.30.13.zip
* DONE (limma)
* installing to library 'C:/Users/biocbuild/bbs-3.4-bioc/R/library'
package 'limma' successfully unpacked and MD5 sums checked