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BioC 3.4: INSTALL report for genomation on tokay1

This page was generated on 2017-04-15 16:19:26 -0400 (Sat, 15 Apr 2017).

Package 503/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genomation 1.6.0
Altuna Akalin , Vedran Franke
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/genomation
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: genomation
Version: 1.6.0
Command: rm -rf genomation.buildbin-libdir && mkdir genomation.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.4/bioc/src/contrib/genomation_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=genomation.buildbin-libdir --merge-multiarch genomation_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL genomation_1.6.0.zip && rm genomation_1.6.0.tar.gz genomation_1.6.0.zip
StartedAt: 2017-04-14 18:18:10 -0400 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 18:19:04 -0400 (Fri, 14 Apr 2017)
EllapsedTime: 54.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf genomation.buildbin-libdir && mkdir genomation.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.4/bioc/src/contrib/genomation_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=genomation.buildbin-libdir --merge-multiarch genomation_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL genomation_1.6.0.zip  && rm genomation_1.6.0.tar.gz genomation_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 6124k    0 14355    0     0   117k      0  0:00:52 --:--:--  0:00:52  117k
100 6124k  100 6124k    0     0  6070k      0  0:00:01  0:00:01 --:--:-- 6076k

install for i386

* installing *source* package 'genomation' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=c++0x -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rhtslib/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=c++0x -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rhtslib/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c idxstats.cpp -o idxstats.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o genomation.dll tmp.def RcppExports.o idxstats.o -LC:/Users/biocbuild/bbs-3.4-bioc/R/library/Rhtslib/lib/i386 -lhts -lz -pthread -lws2_32 -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.4-bioc/meat/genomation.buildbin-libdir/genomation/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'GenomationManual.Rmd' using 'UTF-8' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'genomation' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=c++0x -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rhtslib/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=c++0x -I"C:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/include" -DNDEBUG    -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.4-bioc/R/library/Rhtslib/include" -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c idxstats.cpp -o idxstats.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o genomation.dll tmp.def RcppExports.o idxstats.o -LC:/Users/biocbuild/bbs-3.4-bioc/R/library/Rhtslib/lib/x64 -lhts -lz -pthread -lws2_32 -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.4-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.4-bioc/meat/genomation.buildbin-libdir/genomation/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genomation' as genomation_1.6.0.zip
* DONE (genomation)
* installing to library 'C:/Users/biocbuild/bbs-3.4-bioc/R/library'
package 'genomation' successfully unpacked and MD5 sums checked