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BioC 3.4: CHECK report for crossmeta on tokay1

This page was generated on 2017-04-15 16:21:13 -0400 (Sat, 15 Apr 2017).

Package 281/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
crossmeta 1.0.1
Alex Pickering
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/crossmeta
Last Changed Rev: 124479 / Revision: 128728
Last Changed Date: 2016-11-26 11:05:49 -0500 (Sat, 26 Nov 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: crossmeta
Version: 1.0.1
Command: rm -rf crossmeta.buildbin-libdir crossmeta.Rcheck && mkdir crossmeta.buildbin-libdir crossmeta.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=crossmeta.buildbin-libdir crossmeta_1.0.1.tar.gz >crossmeta.Rcheck\00install.out 2>&1 && cp crossmeta.Rcheck\00install.out crossmeta-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=crossmeta.buildbin-libdir --install="check:crossmeta-install.out" --force-multiarch --no-vignettes --timings crossmeta_1.0.1.tar.gz
StartedAt: 2017-04-14 21:46:22 -0400 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 21:48:55 -0400 (Fri, 14 Apr 2017)
EllapsedTime: 152.8 seconds
RetCode: 0
Status:  OK  
CheckDir: crossmeta.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf crossmeta.buildbin-libdir crossmeta.Rcheck && mkdir crossmeta.buildbin-libdir crossmeta.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=crossmeta.buildbin-libdir crossmeta_1.0.1.tar.gz >crossmeta.Rcheck\00install.out 2>&1 && cp crossmeta.Rcheck\00install.out crossmeta-install.out  && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=crossmeta.buildbin-libdir --install="check:crossmeta-install.out" --force-multiarch --no-vignettes --timings crossmeta_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/crossmeta.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'crossmeta/DESCRIPTION' ... OK
* this is package 'crossmeta' version '1.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'crossmeta' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
setup_prev 16.07   0.22   16.88
diff_expr  15.44   0.39   15.97
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
diff_expr  20.09   0.43   20.50
setup_prev 18.06   0.11   18.17
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

crossmeta.Rcheck/00install.out:


install for i386

* installing *source* package 'crossmeta' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'crossmeta' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'crossmeta' as crossmeta_1.0.1.zip
* DONE (crossmeta)

crossmeta.Rcheck/examples_i386/crossmeta-Ex.timings:

nameusersystemelapsed
contribute0.740.000.74
diff_expr15.44 0.3915.97
es_meta2.640.002.64
get_raw0.680.291.69
load_diff0.270.000.26
load_raw0.230.000.24
open_raw_illum0.020.000.01
setup_prev16.07 0.2216.88
symbol_annot1.830.031.86

crossmeta.Rcheck/examples_x64/crossmeta-Ex.timings:

nameusersystemelapsed
contribute0.870.030.90
diff_expr20.09 0.4320.50
es_meta2.120.012.14
get_raw0.240.051.03
load_diff0.190.000.19
load_raw0.250.000.25
open_raw_illum0.020.000.01
setup_prev18.06 0.1118.17
symbol_annot1.820.001.83