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BioC 3.4: BUILD report for annotatr on morelia

This page was generated on 2017-04-15 16:28:11 -0400 (Sat, 15 Apr 2017).

Package 54/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
annotatr 1.0.3
Raymond G. Cavalcante
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/annotatr
Last Changed Rev: 126491 / Revision: 128728
Last Changed Date: 2017-02-06 16:21:22 -0500 (Mon, 06 Feb 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: annotatr
Version: 1.0.3
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data annotatr
StartedAt: 2017-04-14 21:33:44 -0700 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 21:36:02 -0700 (Fri, 14 Apr 2017)
EllapsedTime: 138.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data annotatr
###
##############################################################################
##############################################################################


* checking for file ‘annotatr/DESCRIPTION’ ... OK
* preparing ‘annotatr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval,
    evalq, get, grep, grepl, intersect, is.unsorted, lapply,
    lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort,
    table, tapply, union, unique, unsplit, which, which.max,
    which.min


Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Building enhancers...
Quitting from lines 127-144 (annotatr-vignette.Rmd) 
Error: processing vignette 'annotatr-vignette.Rmd' failed with diagnostics:
cannot open the connection
Execution halted