Vega 1.22.0
Sandro Morganella
| Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/Vega | | Last Changed Rev: 122710 / Revision: 128728 | | Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | [ OK ] | |
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### Running command:
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### rm -rf Vega.buildbin-libdir && mkdir Vega.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Vega_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Vega.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Vega.buildbin-libdir Vega_1.22.0.tar.gz'
>>>>>>>
* installing *source* package ‘Vega’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c vega.c -o vega.o
vega.c:347:6: warning: unused variable 'index' [-Wunused-variable]
int index;
^
vega.c:348:68: warning: unused variable 'tmp_lambda2' [-Wunused-variable]
double lambda, lambda_gradient, stop_lambda_gradient, tmp_lambda, tmp_lambda2;
^
vega.c:355:13: warning: unused variable 'maxptr' [-Wunused-variable]
node max, *maxptr, tmp_node;
^
vega.c:560:64: warning: unused variable 'next_mean' [-Wunused-variable]
double lambda, first_term, second_term, prev_mean, curr_mean, next_mean;
^
4 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Vega.so vega.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/Vega.buildbin-libdir/Vega/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Vega)
>>>>>>>
>>>>>>> FIXING LINKS FOR Vega.buildbin-libdir/Vega/libs//Vega.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "Vega.buildbin-libdir/Vega/libs//Vega.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "Vega.buildbin-libdir/Vega/libs//Vega.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "Vega.buildbin-libdir/Vega/libs//Vega.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "Vega.buildbin-libdir/Vega/libs//Vega.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "Vega.buildbin-libdir/Vega/libs//Vega.so"