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BioC 3.4: CHECK report for RTCA on tokay1

This page was generated on 2017-04-15 16:16:01 -0400 (Sat, 15 Apr 2017).

Package 1089/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTCA 1.26.0
Jitao David Zhang
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/RTCA
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RTCA
Version: 1.26.0
Command: rm -rf RTCA.buildbin-libdir RTCA.Rcheck && mkdir RTCA.buildbin-libdir RTCA.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTCA.buildbin-libdir RTCA_1.26.0.tar.gz >RTCA.Rcheck\00install.out 2>&1 && cp RTCA.Rcheck\00install.out RTCA-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=RTCA.buildbin-libdir --install="check:RTCA-install.out" --force-multiarch --no-vignettes --timings RTCA_1.26.0.tar.gz
StartedAt: 2017-04-15 00:39:24 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 00:40:17 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 53.2 seconds
RetCode: 0
Status:  OK  
CheckDir: RTCA.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RTCA.buildbin-libdir RTCA.Rcheck && mkdir RTCA.buildbin-libdir RTCA.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTCA.buildbin-libdir RTCA_1.26.0.tar.gz >RTCA.Rcheck\00install.out 2>&1 && cp RTCA.Rcheck\00install.out RTCA-install.out  && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=RTCA.buildbin-libdir --install="check:RTCA-install.out" --force-multiarch --no-vignettes --timings RTCA_1.26.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/RTCA.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RTCA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTCA' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RTCA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'essentials.R'
 OK
** running tests for arch 'x64' ...
  Running 'essentials.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

RTCA.Rcheck/00install.out:


install for i386

* installing *source* package 'RTCA' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RTCA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCA' as RTCA_1.26.0.zip
* DONE (RTCA)

RTCA.Rcheck/examples_i386/RTCA-Ex.timings:

nameusersystemelapsed
RTCA-class0.170.020.19
RTCAtimeline-class000
alphaNames000
combineRTCA0.250.000.25
controlView0.200.000.21
derivativeTransform0.230.010.25
factor2numeric000
interpolationTransform0.470.000.46
nearestTimeIndex0.160.000.16
parseRTCA0.790.000.80
plateView0.360.020.37
plotGridEffect0.320.010.33
ratioTransform0.120.000.13
rgrTransform0.360.040.39
sliceRTCA0.130.000.12
smoothTransform0.260.000.27
spectramaxImport0.020.000.01

RTCA.Rcheck/examples_x64/RTCA-Ex.timings:

nameusersystemelapsed
RTCA-class0.320.000.31
RTCAtimeline-class000
alphaNames0.010.000.02
combineRTCA0.350.000.34
controlView0.200.010.22
derivativeTransform0.200.030.24
factor2numeric0.020.000.01
interpolationTransform0.390.020.41
nearestTimeIndex0.190.000.19
parseRTCA0.70.00.7
plateView0.280.000.28
plotGridEffect0.410.000.41
ratioTransform0.140.000.14
rgrTransform0.360.000.36
sliceRTCA0.150.000.15
smoothTransform0.250.000.25
spectramaxImport0.020.000.02