Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for PCAN on tokay1

This page was generated on 2017-04-15 16:20:51 -0400 (Sat, 15 Apr 2017).

Package 904/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PCAN 1.2.1
Matthew Page and Patrice Godard
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/PCAN
Last Changed Rev: 124977 / Revision: 128728
Last Changed Date: 2016-12-10 00:50:10 -0500 (Sat, 10 Dec 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PCAN
Version: 1.2.1
Command: rm -rf PCAN.buildbin-libdir PCAN.Rcheck && mkdir PCAN.buildbin-libdir PCAN.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PCAN.buildbin-libdir PCAN_1.2.1.tar.gz >PCAN.Rcheck\00install.out 2>&1 && cp PCAN.Rcheck\00install.out PCAN-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=PCAN.buildbin-libdir --install="check:PCAN-install.out" --force-multiarch --no-vignettes --timings PCAN_1.2.1.tar.gz
StartedAt: 2017-04-15 00:00:08 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 00:06:58 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 409.3 seconds
RetCode: 0
Status:  OK  
CheckDir: PCAN.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf PCAN.buildbin-libdir PCAN.Rcheck && mkdir PCAN.buildbin-libdir PCAN.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PCAN.buildbin-libdir PCAN_1.2.1.tar.gz >PCAN.Rcheck\00install.out 2>&1 && cp PCAN.Rcheck\00install.out PCAN-install.out  && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=PCAN.buildbin-libdir --install="check:PCAN-install.out" --force-multiarch --no-vignettes --timings PCAN_1.2.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/PCAN.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PCAN/DESCRIPTION' ... OK
* this is package 'PCAN' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PCAN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
hpGeneHeatmap  50.25   0.12   50.37
compareHPSets  47.74   0.14   47.87
hpGeneListComp 39.82   0.18   39.99
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
hpGeneHeatmap  55.70   0.14   55.84
hpGeneListComp 54.64   0.11   54.75
compareHPSets  53.64   0.19   53.83
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

PCAN.Rcheck/00install.out:


install for i386

* installing *source* package 'PCAN' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'PCAN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PCAN' as PCAN_1.2.1.zip
* DONE (PCAN)

PCAN.Rcheck/examples_i386/PCAN-Ex.timings:

nameusersystemelapsed
calcHpSim2.560.022.58
compareHPSets47.74 0.1447.87
computeHpIC3.030.013.05
geneByHp2.590.022.61
geneByTrait0.080.000.08
geneDef4.280.034.31
hpByTrait3.940.033.97
hpDef3.340.053.39
hpGeneHeatmap50.25 0.1250.37
hpGeneListComp39.82 0.1839.99
hpSetCompBestMatch2.730.092.82
hpSetCompSummary2.640.052.69
hp_ancestors1.990.042.03
hp_class0.060.000.07
hp_descendants1.950.052.00
hqStrNw000
hsEntrezByRPath000
rPath000
traitDef2.770.022.78

PCAN.Rcheck/examples_x64/PCAN-Ex.timings:

nameusersystemelapsed
calcHpSim2.360.062.42
compareHPSets53.64 0.1953.83
computeHpIC2.080.052.13
geneByHp2.020.032.04
geneByTrait0.030.000.03
geneDef3.100.053.16
hpByTrait3.110.043.15
hpDef2.210.032.24
hpGeneHeatmap55.70 0.1455.84
hpGeneListComp54.64 0.1154.75
hpSetCompBestMatch3.240.053.28
hpSetCompSummary3.180.053.24
hp_ancestors2.720.062.78
hp_class0.050.000.04
hp_descendants2.230.032.27
hqStrNw000
hsEntrezByRPath000
rPath000
traitDef3.670.023.69