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BioC 3.4: BUILD report for MEIGOR on morelia

This page was generated on 2017-04-15 16:25:40 -0400 (Sat, 15 Apr 2017).

Package 731/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MEIGOR 1.8.0
Jose Egea
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/MEIGOR
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  TIMEOUT  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: MEIGOR
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MEIGOR
StartedAt: 2017-04-14 19:07:08 -0700 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 19:07:35 -0700 (Fri, 14 Apr 2017)
EllapsedTime: 26.4 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MEIGOR
###
##############################################################################
##############################################################################


* checking for file ‘MEIGOR/DESCRIPTION’ ... OK
* preparing ‘MEIGOR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Rsolnp
Loading required package: snowfall
Loading required package: snow
Loading required package: CNORode
Loading required package: CellNOptR
Loading required package: RBGL
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘parallel’

The following objects are masked from ‘package:snow’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, clusterSplit, makeCluster,
    parApply, parCapply, parLapply, parRapply, parSapply,
    splitIndices, stopCluster


Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:snow’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parRapply, parSapply

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    append, as.data.frame, cbind, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, lengths, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min

Loading required package: hash
hash-2.2.6 provided by Decision Patterns

Loading required package: ggplot2
Loading required package: RCurl
Loading required package: bitops
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: XML

Attaching package: ‘XML’

The following object is masked from ‘package:graph’:

    addNode

Loading required package: genalg

Attaching package: ‘CNORode’

The following object is masked from ‘package:stats’:

    simulate

Loading required package: deSolve
fitting parameter ‘x’ without any variables
Warning in nls(˜nls_fobj(x), start = list(x = x0), trace = disp_iter, algorithm = "port",  :
  Convergence failure: false convergence (8)
fitting parameter ‘x’ without any variables
Warning in nls(˜nls_fobj(x), start = list(x = x0), trace = disp_iter, algorithm = "port",  :
  Convergence failure: singular convergence (7)

Error: processing vignette 'MEIGOR-vignette.Rnw' failed with diagnostics:
 chunk 17 (label = ex3solve) 
Error in hist.default(func, xlab = "Objective function value") : 
  invalid number of 'breaks'
Execution halted