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BioC 3.4: BUILD report for KEGGprofile on morelia

This page was generated on 2017-04-15 16:24:11 -0400 (Sat, 15 Apr 2017).

Package 662/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGprofile 1.16.0
Shilin Zhao
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/KEGGprofile
Last Changed Rev: 123155 / Revision: 128728
Last Changed Date: 2016-10-28 13:53:44 -0400 (Fri, 28 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: KEGGprofile
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data KEGGprofile
StartedAt: 2017-04-14 17:50:27 -0700 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 17:50:48 -0700 (Fri, 14 Apr 2017)
EllapsedTime: 20.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data KEGGprofile
###
##############################################################################
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* checking for file ‘KEGGprofile/DESCRIPTION’ ... OK
* preparing ‘KEGGprofile’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR

KEGG.db contains mappings based on older data because the original
  resource was removed from the the public domain before the most
  recent update was produced. This package should now be considered
  deprecated and future versions of Bioconductor may not have it
  available.  Users who want more current data are encouraged to look
  at the KEGGREST or reactome.db packages


Error: processing vignette 'KEGGprofile.Rnw' failed with diagnostics:
 chunk 2 (label = convertIdExample) 
Error in getBM(attributes = attributes, filters = filters, values = oldId,  : 
  Invalid attribute(s): uniprot_swissprot 
Please use the function 'listAttributes' to get valid attribute names
Execution halted