HilbertCurve 1.4.0
Zuguang Gu
| Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/HilbertCurve | | Last Changed Rev: 122710 / Revision: 128728 | | Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings HilbertCurve_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.8Mb
sub-directories of 1Mb or more:
doc 6.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GenomicHilbertCurve: no visible global function definition for ‘new’
GenomicHilbertCurve: no visible global function definition for
‘slotNames’
GenomicHilbertCurve: no visible global function definition for ‘slot<-’
GenomicHilbertCurve: no visible global function definition for ‘slot’
HilbertCurve: no visible global function definition for ‘new’
hc_centered_text,HilbertCurve : <anonymous>: no visible global function
definition for ‘hist’
hc_layer,GenomicHilbertCurve: no visible global function definition for
‘callNextMethod’
hc_points,GenomicHilbertCurve: no visible global function definition
for ‘callNextMethod’
hc_polygon,GenomicHilbertCurve: no visible global function definition
for ‘callNextMethod’
hc_rect,GenomicHilbertCurve: no visible global function definition for
‘callNextMethod’
hc_segmented_points,HilbertCurve: no visible global function definition
for ‘rgb’
hc_segments,GenomicHilbertCurve: no visible global function definition
for ‘callNextMethod’
hc_text,GenomicHilbertCurve: no visible global function definition for
‘callNextMethod’
Undefined global functions or variables:
callNextMethod hist new rgb slot slot<- slotNames
Consider adding
importFrom("grDevices", "rgb")
importFrom("graphics", "hist")
importFrom("methods", "callNextMethod", "new", "slot", "slot<-",
"slotNames")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
hc_layer-HilbertCurve-method 12.744 0.080 12.834
hc_layer-GenomicHilbertCurve-method 5.624 0.048 5.678
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.4-bioc/meat/HilbertCurve.Rcheck/00check.log’
for details.