Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for GoogleGenomics on tokay1

This page was generated on 2017-04-15 16:19:52 -0400 (Sat, 15 Apr 2017).

Package 541/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GoogleGenomics 1.6.0
Siddhartha Bagaria
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/GoogleGenomics
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GoogleGenomics
Version: 1.6.0
Command: rm -rf GoogleGenomics.buildbin-libdir GoogleGenomics.Rcheck && mkdir GoogleGenomics.buildbin-libdir GoogleGenomics.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GoogleGenomics.buildbin-libdir GoogleGenomics_1.6.0.tar.gz >GoogleGenomics.Rcheck\00install.out 2>&1 && cp GoogleGenomics.Rcheck\00install.out GoogleGenomics-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=GoogleGenomics.buildbin-libdir --install="check:GoogleGenomics-install.out" --force-multiarch --no-vignettes --timings GoogleGenomics_1.6.0.tar.gz
StartedAt: 2017-04-14 22:44:33 -0400 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 22:51:30 -0400 (Fri, 14 Apr 2017)
EllapsedTime: 417.3 seconds
RetCode: 0
Status:  OK  
CheckDir: GoogleGenomics.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GoogleGenomics.buildbin-libdir GoogleGenomics.Rcheck && mkdir GoogleGenomics.buildbin-libdir GoogleGenomics.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GoogleGenomics.buildbin-libdir GoogleGenomics_1.6.0.tar.gz >GoogleGenomics.Rcheck\00install.out 2>&1 && cp GoogleGenomics.Rcheck\00install.out GoogleGenomics-install.out  && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=GoogleGenomics.buildbin-libdir --install="check:GoogleGenomics-install.out" --force-multiarch --no-vignettes --timings GoogleGenomics_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/GoogleGenomics.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GoogleGenomics/DESCRIPTION' ... OK
* this is package 'GoogleGenomics' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GoogleGenomics' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

GoogleGenomics.Rcheck/00install.out:


install for i386

* installing *source* package 'GoogleGenomics' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Configured public API key.

install for x64

* installing *source* package 'GoogleGenomics' ...
** testing if installed package can be loaded
Configured public API key.
* MD5 sums
packaged installation of 'GoogleGenomics' as GoogleGenomics_1.6.0.zip
* DONE (GoogleGenomics)

GoogleGenomics.Rcheck/examples_i386/GoogleGenomics-Ex.timings:

nameusersystemelapsed
authenticate000
getReads0.320.171.11
getReadsPage0.060.000.28
getSearchPage0.010.000.28
getVariants0.580.011.17
getVariantsPage0.990.041.50
readsToGAlignments0.140.030.74
variantsToGRanges1.570.022.63
variantsToVRanges1.660.032.70

GoogleGenomics.Rcheck/examples_x64/GoogleGenomics-Ex.timings:

nameusersystemelapsed
authenticate000
getReads0.200.080.94
getReadsPage0.170.000.51
getSearchPage0.050.000.27
getVariants0.540.051.12
getVariantsPage1.290.001.86
readsToGAlignments0.140.000.75
variantsToGRanges1.420.032.55
variantsToVRanges1.940.033.03