BioC 3.3: CHECK report for roar on moscato2

Package: roar

Version: 1.8.0

Command: rm -rf roar.buildbin-libdir roar.Rcheck && mkdir roar.buildbin-libdir roar.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=roar.buildbin-libdir roar_1.8.0.tar.gz >roar.Rcheck\00install.out 2>&1 && cp roar.Rcheck\00install.out roar-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=roar.buildbin-libdir --install="check:roar-install.out" --force-multiarch --no-vignettes --timings roar_1.8.0.tar.gz

StartedAt: 2016-10-13 08:22:29 -0700 (Thu, 13 Oct 2016)

EndedAt: 2016-10-13 08:27:33 -0700 (Thu, 13 Oct 2016)

EllapsedTime: 303.7 seconds

RetCode: 0

Status:  OK

CheckDir: roar.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf roar.buildbin-libdir roar.Rcheck && mkdir roar.buildbin-libdir roar.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=roar.buildbin-libdir roar_1.8.0.tar.gz >roar.Rcheck\00install.out 2>&1 && cp roar.Rcheck\00install.out roar-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=roar.buildbin-libdir --install="check:roar-install.out" --force-multiarch --no-vignettes --timings roar_1.8.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/roar.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'roar/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'roar' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'roar' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'roar' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'roar' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'roar' as roar_1.8.0.zip
* DONE (roar)

name	user	system	elapsed
RoarDataset-class	0	0	0
RoarDataset-constructor	0.28	0.03	0.31
RoarDatasetFromFiles-constructor	0	0	0
RoarDatasetMultipleAPA-class	0	0	0
RoarDatasetMultipleAPA-constructor	0.41	0.03	0.43
RoarDatasetMultipleAPAFromFiles-constructor	0	0	0
computePairedPvals-method	0.74	0.02	0.75
computePvals-method	0.43	0.00	0.43
computeRoars-method	0.44	0.01	0.45
countPrePost-method	0.40	0.02	0.91
countResults-method	0.45	0.00	0.46
fpkmResults-method	0.47	0.00	0.46
pvalueCorrectFilter-method	0.50	0.00	0.52
pvalueFilter-method	0.42	0.03	0.71
standardFilter-method	0.45	0.00	0.45
totalResults-method	0.45	0.00	0.50

name	user	system	elapsed
RoarDataset-class	0	0	0
RoarDataset-constructor	0.48	0.03	0.51
RoarDatasetFromFiles-constructor	0	0	0
RoarDatasetMultipleAPA-class	0	0	0
RoarDatasetMultipleAPA-constructor	0.84	0.00	0.84
RoarDatasetMultipleAPAFromFiles-constructor	0	0	0
computePairedPvals-method	1.31	0.06	1.39
computePvals-method	0.77	0.03	0.79
computeRoars-method	0.55	0.02	0.56
countPrePost-method	0.51	0.03	0.54
countResults-method	0.48	0.02	0.50
fpkmResults-method	0.51	0.00	0.52
pvalueCorrectFilter-method	0.56	0.03	0.59
pvalueFilter-method	0.86	0.00	0.86
standardFilter-method	0.51	0.01	0.53
totalResults-method	0.55	0.00	0.55