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BioC 3.3: INSTALL report for methylPipe on moscato2

This page was generated on 2016-10-13 12:52:59 -0700 (Thu, 13 Oct 2016).

Package 705/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylPipe 1.6.2
Kamal Kishore
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/methylPipe
Last Changed Rev: 117513 / Revision: 122332
Last Changed Date: 2016-05-15 13:18:19 -0700 (Sun, 15 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  ERROR 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: methylPipe
Version: 1.6.2
Command: rm -rf methylPipe.buildbin-libdir && mkdir methylPipe.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/methylPipe_1.6.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=methylPipe.buildbin-libdir --merge-multiarch methylPipe_1.6.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL methylPipe_1.6.2.zip && rm methylPipe_1.6.2.tar.gz methylPipe_1.6.2.zip
StartedAt: 2016-10-12 19:29:40 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 19:31:16 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 96.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf methylPipe.buildbin-libdir && mkdir methylPipe.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/methylPipe_1.6.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=methylPipe.buildbin-libdir --merge-multiarch methylPipe_1.6.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL methylPipe_1.6.2.zip  && rm methylPipe_1.6.2.tar.gz methylPipe_1.6.2.zip
###
##############################################################################
##############################################################################




install for i386

* installing *source* package 'methylPipe' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_methylPipe.c -o R_init_methylPipe.o
C:/Rtools/mingw_32/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c binning.c -o binning.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o methylPipe.dll tmp.def R_init_methylPipe.o binning.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/methylPipe.buildbin-libdir/methylPipe/libs/i386
** R
** exec
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'methylPipe' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_methylPipe.c -o R_init_methylPipe.o
C:/Rtools/mingw_64/bin/gcc  -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c binning.c -o binning.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o methylPipe.dll tmp.def R_init_methylPipe.o binning.o -Lc:/local323/lib/x64 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/methylPipe.buildbin-libdir/methylPipe/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylPipe' as methylPipe_1.6.2.zip
* DONE (methylPipe)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'methylPipe' successfully unpacked and MD5 sums checked