Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: CHECK report for pwOmics on zin1

This page was generated on 2016-04-23 10:14:44 -0700 (Sat, 23 Apr 2016).

Package 818/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pwOmics 1.2.0
Astrid Wachter
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/pwOmics
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: pwOmics
Version: 1.2.0
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings pwOmics_1.2.0.tar.gz
StartedAt: 2016-04-23 04:10:14 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 04:12:07 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 113.5 seconds
RetCode: 0
Status:  OK 
CheckDir: pwOmics.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings pwOmics_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/pwOmics.Rcheck’
* using R version 3.2.4 Revised (2016-03-16 r70336)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pwOmics/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pwOmics’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pwOmics’ can be installed ... [9s/9s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [16s/17s] OK
Examples with CPU or elapsed time > 5s
            user system elapsed
readTFdata 9.773   0.38   10.54
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’ [4s/4s]
 [4s/4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

pwOmics.Rcheck/00install.out:

* installing *source* package ‘pwOmics’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (pwOmics)

pwOmics.Rcheck/pwOmics-Ex.timings:

nameusersystemelapsed
clusterTimeProfiles0.0590.0080.067
consDynamicNet0.0550.0000.055
enrichPWs0.0420.0040.046
enrichTFs0.0430.0000.046
getBiopaxModel0.050.000.05
getDS_PWs0.0460.0000.046
getDS_TFs0.0450.0040.049
getDS_TGs0.0480.0000.048
getGenesIntersection0.0460.0000.046
getOmicsDataset0.0820.0320.113
getOmicsTimepoints0.0450.0000.046
getOmicsallGeneIDs0.3030.0760.379
getOmicsallProteinIDs0.2330.0040.237
getProteinIntersection0.0460.0000.045
getTFIntersection0.0420.0040.047
getUS_PWs0.0470.0000.047
getUS_TFs0.0470.0040.051
getUS_regulators0.0470.0000.048
gettpIntersection0.0470.0000.047
identifyPWTFTGs0.0460.0000.046
identifyPWs0.0420.0040.045
identifyRsofTFs0.0480.0000.049
identifyTFs0.0460.0000.045
plotConsDynNet0.0480.0000.048
plotConsensusGraph0.0420.0040.045
plotTimeProfileClusters0.0490.0000.049
readOmics0.0460.0000.045
readPWdata0.0460.0000.046
readTFdata 9.773 0.38010.540
staticConsensusNet0.0480.0000.048