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BioC 3.2: INSTALL report for genefilter on zin1

This page was generated on 2016-04-23 10:09:45 -0700 (Sat, 23 Apr 2016).

Package 399/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genefilter 1.52.1
Bioconductor Package Maintainer
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/genefilter
Last Changed Rev: 112947 / Revision: 116712
Last Changed Date: 2016-01-27 07:59:31 -0800 (Wed, 27 Jan 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: genefilter
Version: 1.52.1
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD INSTALL genefilter
StartedAt: 2016-04-22 17:05:08 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 17:05:18 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 10.1 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD INSTALL genefilter
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.2-bioc/R/library’
* installing *source* package ‘genefilter’ ...
** libs
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c half_range_mode.cpp -o half_range_mode.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c init.c -o init.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c nd.c -o nd.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c pAUC.c -o pAUC.o
pAUC.c: In function ‘pAUC’:
pAUC.c:140:13: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
     if(rows != INTEGER(dimSens)[1] | columns != INTEGER(dimSens)[0])
             ^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c rowPAUCs.c -o rowPAUCs.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c rowttests.c -o rowttests.o
gfortran   -fpic  -g -O2  -Wall -c ttest.f -o ttest.o
ttest.f:47.12:

         dm=dm1-dm2                                                     
            1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
ttest.f:50.12:

         dm=dm1/dm2                                                     
            1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
ttest.f:59.13:

         tst=(dm1-dm2)/sqrt((1.d0/ng1+1.d0/ng2)*(dss1+dss2)/(ng1+ng2-2))
             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
ttest.f:62.10:

      tst=(dm1-dm2)/sqrt(dss1/((ng1-1)*ng1)+dss2/((ng2-1)*ng2))         
          1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
g++ -shared -L/home/biocbuild/bbs-3.2-bioc/R/lib -L/usr/local/lib -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.2-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.2-bioc/R/library/genefilter/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘genefilter’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (genefilter)