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BioC 3.2: CHECK report for acde on moscato1

This page was generated on 2016-04-23 10:22:01 -0700 (Sat, 23 Apr 2016).

Package 10/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
acde 1.0.0
Juan Pablo Acosta
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/acde
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: acde
Version: 1.0.0
Command: rm -rf acde.buildbin-libdir acde.Rcheck && mkdir acde.buildbin-libdir acde.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=acde.buildbin-libdir acde_1.0.0.tar.gz >acde.Rcheck\00install.out 2>&1 && cp acde.Rcheck\00install.out acde-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=acde.buildbin-libdir --install="check:acde-install.out" --force-multiarch --no-vignettes --timings acde_1.0.0.tar.gz
StartedAt: 2016-04-22 23:16:02 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 23:21:06 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 304.1 seconds
RetCode: 0
Status:  OK  
CheckDir: acde.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf acde.buildbin-libdir acde.Rcheck && mkdir acde.buildbin-libdir acde.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=acde.buildbin-libdir acde_1.0.0.tar.gz >acde.Rcheck\00install.out 2>&1 && cp acde.Rcheck\00install.out acde-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=acde.buildbin-libdir --install="check:acde-install.out" --force-multiarch --no-vignettes --timings acde_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/acde.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'acde/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'acde' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'acde' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [81s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
bcaFDR 59.56      0   59.56
** running examples for arch 'x64' ... [76s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
bcaFDR 55.72      0   55.78
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [2s]
 [3s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [1s]
 [2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

acde.Rcheck/00install.out:


install for i386

* installing *source* package 'acde' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'acde' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'acde' as acde_1.0.0.zip
* DONE (acde)

acde.Rcheck/examples_i386/acde-Ex.timings:

nameusersystemelapsed
ac0.390.000.45
acde-package4.770.014.96
bcaFDR59.56 0.0059.56
fdr1.10.01.1
phytophthora0.030.000.03
plot.STP1.290.001.29
plot.TC3.480.003.48
print.STP1.190.001.18
print.TC3.690.003.70
qval0.940.000.94
stp0.970.000.96
tc2.470.002.46

acde.Rcheck/examples_x64/acde-Ex.timings:

nameusersystemelapsed
ac0.270.010.28
acde-package4.870.004.87
bcaFDR55.72 0.0055.78
fdr0.860.000.86
phytophthora0.010.000.02
plot.STP0.830.000.82
plot.TC2.990.023.06
print.STP1.420.001.42
print.TC3.030.003.66
qval1.320.001.33
stp1.020.011.03
tc2.650.022.74