SeqArray 1.10.6
Xiuwen Zheng
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/SeqArray | | Last Changed Rev: 110797 / Revision: 116712 | | Last Changed Date: 2015-11-22 15:51:09 -0800 (Sun, 22 Nov 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | [ OK ] | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD INSTALL SeqArray
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* installing to library ‘/home/biocbuild/bbs-3.2-bioc/R/library’
* installing *source* package ‘SeqArray’ ...
** libs
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include" -fpic -g -O2 -Wall -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include" -fpic -g -O2 -Wall -c ConvToGDS.cpp -o ConvToGDS.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include" -fpic -g -O2 -Wall -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include" -fpic -g -O2 -Wall -c GetData.cpp -o GetData.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include" -fpic -g -O2 -Wall -c LinkSNPRelate.cpp -o LinkSNPRelate.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include" -fpic -g -O2 -Wall -c Methods.cpp -o Methods.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include" -fpic -g -O2 -Wall -c R_SeqArray.c -o R_SeqArray.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include" -fpic -g -O2 -Wall -c ReadBySample.cpp -o ReadBySample.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include" -fpic -g -O2 -Wall -c ReadByVariant.cpp -o ReadByVariant.o
g++ -I/home/biocbuild/bbs-3.2-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.2-bioc/R/library/gdsfmt/include" -fpic -g -O2 -Wall -c SeqArray.cpp -o SeqArray.o
g++ -shared -L/home/biocbuild/bbs-3.2-bioc/R/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o GetData.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByVariant.o SeqArray.o -L/home/biocbuild/bbs-3.2-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.2-bioc/R/library/SeqArray/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
‘AnalysisTutorial.Rmd’
‘SeqArrayTutorial.Rmd’
** testing if installed package can be loaded
* DONE (SeqArray)