Back to Workflows build report for BioC 3.19

This page was generated on 2024-05-21 14:00:09 -0400 (Tue, 21 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4751
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4485
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4515
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 23/30HostnameOS / ArchINSTALLBUILD
RnaSeqGeneEdgeRQL 1.28.0  (landing page)
Yunshun Chen
Snapshot Date: 2024-05-21 07:45:01 -0400 (Tue, 21 May 2024)
git_url: https://git.bioconductor.org/packages/RnaSeqGeneEdgeRQL
git_branch: RELEASE_3_19
git_last_commit: a9121b4
git_last_commit_date: 2024-04-30 10:13:33 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for RnaSeqGeneEdgeRQL on nebbiolo1


To the developers/maintainers of the RnaSeqGeneEdgeRQL package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: RnaSeqGeneEdgeRQL
Version: 1.28.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RnaSeqGeneEdgeRQL
StartedAt: 2024-05-21 08:03:09 -0400 (Tue, 21 May 2024)
EndedAt: 2024-05-21 08:03:55 -0400 (Tue, 21 May 2024)
EllapsedTime: 46.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RnaSeqGeneEdgeRQL
###
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* checking for file ‘RnaSeqGeneEdgeRQL/DESCRIPTION’ ... OK
* preparing ‘RnaSeqGeneEdgeRQL’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘edgeRQL.Rmd’ using rmarkdown
trying URL 'http://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60450&format=file&file=GSE60450_Lactation-GenewiseCounts.txt.gz'

Quitting from lines 120-128 [checkdownload] (edgeRQL.Rmd)
Error: processing vignette 'edgeRQL.Rmd' failed with diagnostics:
cannot open URL 'http://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60450&format=file&file=GSE60450_Lactation-GenewiseCounts.txt.gz'
--- failed re-building ‘edgeRQL.Rmd’

SUMMARY: processing the following file failed:
  ‘edgeRQL.Rmd’

Error: Vignette re-building failed.
Execution halted