Mike Smith
| Snapshot Date: 2024-05-16 07:30:03 -0400 (Thu, 16 May 2024) |
| git_url: https://git.bioconductor.org/packages/DmelSGI |
| git_branch: RELEASE_3_19 |
| git_last_commit: ade0469 |
| git_last_commit_date: 2024-04-30 10:43:26 -0400 (Tue, 30 Apr 2024) |
| Back to Build/check report for BioC 3.19 experimental data |
|
This page was generated on 2024-05-16 14:51:31 -0400 (Thu, 16 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4751 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 97/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| DmelSGI 1.36.0 (landing page) Mike Smith
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | |||||||
|
To the developers/maintainers of the DmelSGI package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DmelSGI |
| Version: 1.36.0 |
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:DmelSGI.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings DmelSGI_1.36.0.tar.gz |
| StartedAt: 2024-05-16 11:15:50 -0400 (Thu, 16 May 2024) |
| EndedAt: 2024-05-16 11:20:29 -0400 (Thu, 16 May 2024) |
| EllapsedTime: 279.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DmelSGI.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:DmelSGI.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings DmelSGI_1.36.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/DmelSGI.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘DmelSGI/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DmelSGI’ version ‘1.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DmelSGI’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 138.6Mb
sub-directories of 1Mb or more:
data 137.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.19-data-experiment/meat/DmelSGI.Rcheck/00check.log’
for details.
DmelSGI.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL DmelSGI ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘DmelSGI’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DmelSGI)
DmelSGI.Rcheck/DmelSGI-Ex.timings
| name | user | system | elapsed | |
| ChromatinSet-package | 3.748 | 0.055 | 3.803 | |
| DPiM | 0.014 | 0.001 | 0.014 | |
| FBgn2anno | 0.318 | 0.008 | 0.326 | |
| Features | 0.004 | 0.000 | 0.003 | |
| Interactions | 1.905 | 0.047 | 1.952 | |
| Intogen | 0.009 | 0.001 | 0.008 | |
| RohnEtAl | 0.002 | 0.000 | 0.002 | |
| SKDdata | 0.346 | 0.008 | 0.355 | |
| SelectedClusters | 0.001 | 0.000 | 0.002 | |
| SelectedClustersComplexes | 0.000 | 0.000 | 0.001 | |
| TID2HUGO | 0.005 | 0.000 | 0.005 | |
| applyDimensionReduction | 0.002 | 0.000 | 0.002 | |
| callInteractions | 0.000 | 0.000 | 0.001 | |
| datamatrix | 3.725 | 0.062 | 3.787 | |
| estimatePairwiseInteractions | 0.002 | 0.001 | 0.002 | |
| fitepistasis | 0.113 | 0.023 | 0.137 | |
| getBaseDir | 0.001 | 0.001 | 0.001 | |
| grid.spider | 0.000 | 0.002 | 0.002 | |
| hrNames | 0 | 0 | 0 | |
| learnCoComplexityFct | 0.001 | 0.001 | 0.000 | |
| mainEffects | 0.060 | 0.008 | 0.067 | |
| myHeatmap | 0.001 | 0.000 | 0.001 | |
| mymedpolish | 0.001 | 0.000 | 0.002 | |
| orderDim | 0.000 | 0.000 | 0.001 | |
| orderSpiderAxis | 0.001 | 0.000 | 0.001 | |
| pimatrix | 0.522 | 0.060 | 0.581 | |
| plot2Phenotypes | 0.003 | 0.000 | 0.002 | |
| plotHairballLabels | 0.001 | 0.000 | 0.001 | |
| qualityControlFeature | 0.000 | 0.003 | 0.004 | |
| qualityControlGene | 0.013 | 0.000 | 0.013 | |
| selectByStability | 0.002 | 0.000 | 0.001 | |
| stabilitySelection | 0.071 | 0.000 | 0.070 | |
| subSampleForStabilitySelection | 0.06 | 0.00 | 0.06 | |
| subSampleForStabilitySelectionFct | 0.001 | 0.000 | 0.001 | |
| toMatrix | 0.001 | 0.000 | 0.000 | |
| toRaster | 0 | 0 | 0 | |
| trsf | 0 | 0 | 0 | |