Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-31 17:03:05 -0400 (Fri, 31 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4464 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1308/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mobileRNA 1.0.1 (landing page) Katie Jeynes-Cupper
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the mobileRNA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: mobileRNA |
Version: 1.0.1 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings mobileRNA_1.0.1.tar.gz |
StartedAt: 2024-05-31 05:42:00 -0400 (Fri, 31 May 2024) |
EndedAt: 2024-05-31 05:47:48 -0400 (Fri, 31 May 2024) |
EllapsedTime: 347.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mobileRNA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings mobileRNA_1.0.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/mobileRNA.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘mobileRNA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mobileRNA’ version ‘1.0.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mobileRNA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed RNAdistribution 10.787 0.096 10.884 RNAdicercall 10.661 0.216 10.877 RNAsubset 9.967 0.024 9.992 RNAdifferentialAnalysis 6.759 0.212 6.971 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
mobileRNA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL mobileRNA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘mobileRNA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mobileRNA)
mobileRNA.Rcheck/mobileRNA-Ex.timings
name | user | system | elapsed | |
RNAattributes | 0.493 | 0.020 | 0.513 | |
RNAdf2se | 0.24 | 0.00 | 0.24 | |
RNAdicercall | 10.661 | 0.216 | 10.877 | |
RNAdifferentialAnalysis | 6.759 | 0.212 | 6.971 | |
RNAdistribution | 10.787 | 0.096 | 10.884 | |
RNAfeatures | 1.099 | 0.000 | 1.099 | |
RNAimport | 0.001 | 0.000 | 0.001 | |
RNAmergeAnnotations | 0.261 | 0.000 | 0.261 | |
RNAmergeGenomes | 0.061 | 0.001 | 0.063 | |
RNAmobile | 0.581 | 0.007 | 0.588 | |
RNApopulation | 1.826 | 0.017 | 1.841 | |
RNAreorder | 0.153 | 0.004 | 0.157 | |
RNAsequences | 1.230 | 0.048 | 1.278 | |
RNAsubset | 9.967 | 0.024 | 9.992 | |
RNAsummary | 4.391 | 0.072 | 4.464 | |
mRNA_data | 0.099 | 0.000 | 0.099 | |
mapRNA | 0.000 | 0.000 | 0.001 | |
plotHeatmap | 0.585 | 0.035 | 0.621 | |
plotRNAfeatures | 0.990 | 0.007 | 0.998 | |
plotSampleDistance | 2.261 | 0.016 | 2.277 | |
plotSamplePCA | 3.483 | 0.111 | 3.596 | |
sRNA_data | 0.134 | 0.003 | 0.139 | |