Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-22 11:35:52 -0400 (Wed, 22 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4751 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4485 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 3444 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1225/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
metaseqR2 1.16.0 (landing page) Panagiotis Moulos
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the metaseqR2 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metaseqR2.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: metaseqR2 |
Version: 1.16.0 |
Command: chmod a+r metaseqR2 -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data metaseqR2 |
StartedAt: 2024-05-21 19:57:52 -0400 (Tue, 21 May 2024) |
EndedAt: 2024-05-21 20:07:02 -0400 (Tue, 21 May 2024) |
EllapsedTime: 549.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r metaseqR2 -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data metaseqR2 ### ############################################################################## ############################################################################## * checking for file 'metaseqR2/DESCRIPTION' ... OK * preparing 'metaseqR2': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'metaseqr2-annotation.Rmd' using rmarkdown --- finished re-building 'metaseqr2-annotation.Rmd' --- re-building 'metaseqr2-statistics.Rmd' using rmarkdown adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/qc/correlation_correlogram.png (deflated 7%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/qc/correlation_heatmap.png (deflated 22%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/qc/correlation_pairs.png (deflated 3%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/qc/filtered_genes.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/qc/mds.png (deflated 49%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/boxplot_normalized.png (deflated 28%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/boxplot_raw.png (deflated 26%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/gcbias_normalized.png (deflated 13%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/gcbias_raw.png (deflated 13%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/lengthbias_normalized.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/lengthbias_raw.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meanvar_normalized.png (deflated 8%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meanvar_raw.png (deflated 6%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.png (deflated 15%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.png (deflated 13%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.png (deflated 15%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/qc/correlation_correlogram.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/qc/correlation_heatmap.pdf (deflated 26%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/qc/correlation_pairs.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/qc/filtered_genes.pdf (deflated 7%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/qc/mds.pdf (deflated 12%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/boxplot_normalized.pdf (deflated 12%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/boxplot_raw.pdf (deflated 12%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/gcbias_normalized.pdf (deflated 3%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/gcbias_raw.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/lengthbias_normalized.pdf (deflated 1%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/lengthbias_raw.pdf (deflated 1%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 21%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.pdf (deflated 21%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 20%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.pdf (deflated 20%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meanvar_normalized.pdf (deflated 44%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/normalization/meanvar_raw.pdf (deflated 39%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.pdf (deflated 9%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.pdf (deflated 8%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.pdf (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test1/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.pdf (deflated 2%) trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js' Content type 'text/plain; charset=utf-8' length 12363 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://code.highcharts.com/highcharts.js' downloaded 269 KB trying URL 'https://code.highcharts.com/highcharts-more.js' downloaded 92 KB trying URL 'https://code.highcharts.com/modules/exporting.js' downloaded 19 KB trying URL 'https://code.highcharts.com/modules/offline-exporting.js' downloaded 9681 bytes trying URL 'https://code.highcharts.com/modules/export-data.js' downloaded 12 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/canvas2svg.js' Content type 'text/javascript' length 35122 bytes (34 KB) ================================================== downloaded 34 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/jvenn.min.js' Content type 'text/javascript' length 100524 bytes (98 KB) ================================================== downloaded 98 KB trying URL 'https://unpkg.com/dexie@2.0.4/dist/dexie.min.js' downloaded 55 KB adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/qc/correlation_correlogram.png (deflated 7%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/qc/correlation_heatmap.png (deflated 22%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/qc/correlation_pairs.png (deflated 3%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/qc/filtered_genes.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/qc/mds.png (deflated 49%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/boxplot_normalized.png (deflated 27%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/boxplot_raw.png (deflated 26%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/gcbias_normalized.png (deflated 25%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/gcbias_raw.png (deflated 13%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/lengthbias_normalized.png (deflated 14%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/lengthbias_raw.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 7%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 7%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meanvar_normalized.png (deflated 6%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meanvar_raw.png (deflated 6%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.png (deflated 12%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.png (deflated 15%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.png (deflated 13%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.png (deflated 21%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/qc/correlation_correlogram.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/qc/correlation_heatmap.pdf (deflated 26%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/qc/correlation_pairs.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/qc/filtered_genes.pdf (deflated 7%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/qc/mds.pdf (deflated 12%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/boxplot_normalized.pdf (deflated 8%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/boxplot_raw.pdf (deflated 12%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/gcbias_normalized.pdf (deflated 6%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/gcbias_raw.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/lengthbias_normalized.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/lengthbias_raw.pdf (deflated 1%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 33%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.pdf (deflated 33%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 20%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.pdf (deflated 20%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meanvar_normalized.pdf (deflated 40%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/normalization/meanvar_raw.pdf (deflated 39%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.pdf (deflated 10%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.pdf (deflated 8%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.pdf (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test2/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.pdf (deflated 2%) trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js' Content type 'text/plain; charset=utf-8' length 12363 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://code.highcharts.com/highcharts.js' downloaded 269 KB trying URL 'https://code.highcharts.com/highcharts-more.js' downloaded 92 KB trying URL 'https://code.highcharts.com/modules/exporting.js' downloaded 19 KB trying URL 'https://code.highcharts.com/modules/offline-exporting.js' downloaded 9681 bytes trying URL 'https://code.highcharts.com/modules/export-data.js' downloaded 12 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/canvas2svg.js' Content type 'text/javascript' length 35122 bytes (34 KB) ================================================== downloaded 34 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/jvenn.min.js' Content type 'text/javascript' length 100524 bytes (98 KB) ================================================== downloaded 98 KB trying URL 'https://unpkg.com/dexie@2.0.4/dist/dexie.min.js' downloaded 55 KB adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/qc/correlation_correlogram.png (deflated 7%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/qc/correlation_heatmap.png (deflated 22%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/qc/correlation_pairs.png (deflated 3%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/qc/filtered_genes.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/qc/mds.png (deflated 49%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/boxplot_normalized.png (deflated 36%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/boxplot_raw.png (deflated 26%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/gcbias_normalized.png (deflated 14%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/gcbias_raw.png (deflated 13%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/lengthbias_normalized.png (deflated 10%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/lengthbias_raw.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 6%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 6%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meanvar_normalized.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meanvar_raw.png (deflated 6%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.png (deflated 15%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.png (deflated 14%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.png (deflated 23%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/qc/correlation_correlogram.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/qc/correlation_heatmap.pdf (deflated 26%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/qc/correlation_pairs.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/qc/filtered_genes.pdf (deflated 7%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/qc/mds.pdf (deflated 12%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/boxplot_normalized.pdf (deflated 12%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/boxplot_raw.pdf (deflated 12%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/gcbias_normalized.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/gcbias_raw.pdf (deflated 4%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/lengthbias_normalized.pdf (deflated 2%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/lengthbias_raw.pdf (deflated 1%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 21%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.pdf (deflated 21%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 20%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.pdf (deflated 20%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meanvar_normalized.pdf (deflated 30%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/normalization/meanvar_raw.pdf (deflated 39%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.pdf (deflated 10%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.pdf (deflated 8%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.pdf (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test3/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.pdf (deflated 2%) trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js' Content type 'text/plain; charset=utf-8' length 12363 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://code.highcharts.com/highcharts.js' downloaded 269 KB trying URL 'https://code.highcharts.com/highcharts-more.js' downloaded 92 KB trying URL 'https://code.highcharts.com/modules/exporting.js' downloaded 19 KB trying URL 'https://code.highcharts.com/modules/offline-exporting.js' downloaded 9681 bytes trying URL 'https://code.highcharts.com/modules/export-data.js' downloaded 12 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/canvas2svg.js' Content type 'text/javascript' length 35122 bytes (34 KB) ================================================== downloaded 34 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/jvenn.min.js' Content type 'text/javascript' length 100524 bytes (98 KB) ================================================== downloaded 98 KB trying URL 'https://unpkg.com/dexie@2.0.4/dist/dexie.min.js' downloaded 55 KB adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/qc/correlation_correlogram.png (deflated 7%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/qc/correlation_heatmap.png (deflated 22%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/qc/correlation_pairs.png (deflated 3%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/qc/filtered_genes.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/qc/mds.png (deflated 49%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/boxplot_normalized.png (deflated 36%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/boxplot_raw.png (deflated 26%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/gcbias_normalized.png (deflated 14%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/gcbias_raw.png (deflated 13%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/lengthbias_normalized.png (deflated 10%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/lengthbias_raw.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 6%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 6%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/meanvar_normalized.png (deflated 5%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/normalization/meanvar_raw.png (deflated 6%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.png (deflated 11%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.png (deflated 15%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.png (deflated 14%) adding: biocbuild/bbs-3.19-bioc/tmpdir/RtmpyAjsR0/test4/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.png (deflated 23%) trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js' Content type 'text/plain; charset=utf-8' length 12363 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://code.highcharts.com/highcharts.js' downloaded 269 KB trying URL 'https://code.highcharts.com/highcharts-more.js' downloaded 92 KB trying URL 'https://code.highcharts.com/modules/exporting.js' downloaded 19 KB trying URL 'https://code.highcharts.com/modules/offline-exporting.js' downloaded 9681 bytes trying URL 'https://code.highcharts.com/modules/export-data.js' downloaded 12 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/canvas2svg.js' Content type 'text/javascript' length 35122 bytes (34 KB) ================================================== downloaded 34 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/jvenn.min.js' Content type 'text/javascript' length 100524 bytes (98 KB) ================================================== downloaded 98 KB trying URL 'https://unpkg.com/dexie@2.0.4/dist/dexie.min.js' downloaded 55 KB Quitting from lines 438-446 [example-5] (metaseqr2-statistics.Rmd) Error: processing vignette 'metaseqr2-statistics.Rmd' failed with diagnostics: HTTP 500 Internal Server Error. --- failed re-building 'metaseqr2-statistics.Rmd' SUMMARY: processing the following file failed: 'metaseqr2-statistics.Rmd' Error: Vignette re-building failed. Execution halted