Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-31 17:02:56 -0400 (Fri, 31 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4464 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 612/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
drugTargetInteractions 1.12.0 (landing page) Thomas Girke
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the drugTargetInteractions package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/drugTargetInteractions.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: drugTargetInteractions |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings drugTargetInteractions_1.12.0.tar.gz |
StartedAt: 2024-05-31 03:20:01 -0400 (Fri, 31 May 2024) |
EndedAt: 2024-05-31 03:27:04 -0400 (Fri, 31 May 2024) |
EllapsedTime: 423.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: drugTargetInteractions.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings drugTargetInteractions_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/drugTargetInteractions.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘drugTargetInteractions/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘drugTargetInteractions’ version ‘1.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘drugTargetInteractions’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .getCacheFile: no visible binding for global variable 'create_time' getParalogs: no visible global function definition for 'setNames' Undefined global functions or variables: create_time setNames Consider adding importFrom("stats", "setNames") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed drugTargetAnnotTable 44.541 2.264 46.809 processDrugage 31.820 0.616 33.303 transformTTD 3.673 0.096 8.661 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.19-bioc/meat/drugTargetInteractions.Rcheck/00check.log’ for details.
drugTargetInteractions.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL drugTargetInteractions ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘drugTargetInteractions’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (drugTargetInteractions)
drugTargetInteractions.Rcheck/drugTargetInteractions-Ex.timings
name | user | system | elapsed | |
cmpIdMapping | 0.000 | 0.000 | 0.001 | |
downloadChemblDb | 0 | 0 | 0 | |
downloadUniChem | 1.752 | 0.208 | 2.662 | |
drugTargetAnnot | 0.015 | 0.004 | 0.021 | |
drugTargetAnnotTable | 44.541 | 2.264 | 46.809 | |
drugTargetBioactivity | 0.07 | 0.00 | 0.07 | |
genConfig | 0 | 0 | 0 | |
getDrugTarget | 0.013 | 0.004 | 0.017 | |
getParalogs | 0.000 | 0.000 | 0.001 | |
getSymEnsUp | 0.863 | 0.112 | 0.980 | |
getUniprotIDs | 0 | 0 | 0 | |
processDrugage | 31.820 | 0.616 | 33.303 | |
runDrugTarget_Annot_Bioassay | 0.356 | 0.012 | 0.368 | |
transformTTD | 3.673 | 0.096 | 8.661 | |