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This page was generated on 2024-05-30 11:35:56 -0400 (Thu, 30 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4753
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4518
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2035/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpatialFeatureExperiment 1.6.1  (landing page)
Lambda Moses
Snapshot Date: 2024-05-29 14:00:10 -0400 (Wed, 29 May 2024)
git_url: https://git.bioconductor.org/packages/SpatialFeatureExperiment
git_branch: RELEASE_3_19
git_last_commit: 116207a
git_last_commit_date: 2024-05-14 23:02:52 -0400 (Tue, 14 May 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

BUILD results for SpatialFeatureExperiment on lconway


To the developers/maintainers of the SpatialFeatureExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpatialFeatureExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SpatialFeatureExperiment
Version: 1.6.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SpatialFeatureExperiment
StartedAt: 2024-05-29 18:33:28 -0400 (Wed, 29 May 2024)
EndedAt: 2024-05-29 18:35:28 -0400 (Wed, 29 May 2024)
EllapsedTime: 119.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SpatialFeatureExperiment
###
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* checking for file ‘SpatialFeatureExperiment/DESCRIPTION’ ... OK
* preparing ‘SpatialFeatureExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SFE.Rmd’ using rmarkdown

Quitting from lines 380-381 [unnamed-chunk-53] (SFE.Rmd)
Error: processing vignette 'SFE.Rmd' failed with diagnostics:
unable to load shared object '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so, 0x0006): symbol not found in flat namespace (_utf8proc_category)
--- failed re-building ‘SFE.Rmd’

SUMMARY: processing the following file failed:
  ‘SFE.Rmd’

Error: Vignette re-building failed.
Execution halted