Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-07 20:24 -0400 (Fri, 07 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4755 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4489 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4520 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HPiP_1.10.0.tar.gz |
StartedAt: 2024-06-05 23:58:22 -0400 (Wed, 05 Jun 2024) |
EndedAt: 2024-06-06 00:11:55 -0400 (Thu, 06 Jun 2024) |
EllapsedTime: 812.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HPiP_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 37.031 1.032 38.065 FSmethod 35.325 0.587 35.914 corr_plot 35.212 0.315 35.531 pred_ensembel 13.679 0.385 10.785 enrichfindP 0.538 0.020 9.280 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 97.750180 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 94.892827 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 96.344494 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 97.143385 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 97.391749 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 99.345953 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 98.724959 iter 10 value 93.870291 iter 20 value 93.469443 iter 30 value 93.324058 iter 40 value 93.322894 iter 40 value 93.322893 iter 40 value 93.322893 final value 93.322893 converged Fitting Repeat 3 # weights: 305 initial value 121.664983 final value 93.582418 converged Fitting Repeat 4 # weights: 305 initial value 96.523816 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 95.719064 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 106.094752 final value 93.582418 converged Fitting Repeat 2 # weights: 507 initial value 94.998140 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 116.136230 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 102.815526 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 103.941288 iter 10 value 93.276344 iter 20 value 93.193062 iter 20 value 93.193062 iter 20 value 93.193062 final value 93.193062 converged Fitting Repeat 1 # weights: 103 initial value 101.704268 iter 10 value 94.077283 iter 20 value 94.054900 iter 30 value 92.787561 iter 40 value 86.840936 iter 50 value 86.490940 iter 60 value 84.923420 iter 70 value 84.376927 iter 80 value 84.221889 iter 90 value 84.046403 iter 100 value 83.953735 final value 83.953735 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 105.903391 iter 10 value 94.056898 iter 20 value 94.003434 iter 30 value 93.687996 iter 40 value 93.683831 iter 50 value 93.598857 iter 60 value 90.308152 iter 70 value 86.473190 iter 80 value 84.414025 iter 90 value 84.312186 iter 100 value 84.228233 final value 84.228233 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 98.633985 iter 10 value 94.067162 iter 20 value 94.045447 iter 30 value 93.775255 iter 40 value 93.773073 iter 50 value 93.715273 iter 60 value 87.903156 iter 70 value 86.647954 iter 80 value 86.252581 iter 90 value 85.302348 iter 100 value 83.912335 final value 83.912335 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 98.162342 iter 10 value 93.802488 iter 20 value 89.719998 iter 30 value 87.663838 iter 40 value 86.144260 iter 50 value 86.026110 iter 60 value 85.044145 iter 70 value 84.769523 iter 80 value 84.618556 iter 90 value 84.420122 iter 100 value 84.393631 final value 84.393631 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 102.675597 iter 10 value 94.052586 iter 20 value 93.965278 iter 30 value 93.881756 iter 40 value 93.770684 iter 50 value 92.883030 iter 60 value 87.399951 iter 70 value 86.396441 iter 80 value 86.232747 iter 90 value 85.350023 iter 100 value 83.409627 final value 83.409627 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 121.378573 iter 10 value 94.429475 iter 20 value 94.059536 iter 30 value 93.787118 iter 40 value 92.823595 iter 50 value 87.818809 iter 60 value 86.596644 iter 70 value 85.995894 iter 80 value 83.505874 iter 90 value 82.177954 iter 100 value 81.982136 final value 81.982136 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.225097 iter 10 value 87.762740 iter 20 value 84.952660 iter 30 value 84.367471 iter 40 value 83.648558 iter 50 value 83.455862 iter 60 value 82.147451 iter 70 value 80.924675 iter 80 value 80.401756 iter 90 value 80.325833 iter 100 value 80.067007 final value 80.067007 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 117.767019 iter 10 value 95.534971 iter 20 value 93.444237 iter 30 value 92.572965 iter 40 value 89.256023 iter 50 value 84.769577 iter 60 value 84.175193 iter 70 value 83.134541 iter 80 value 82.687487 iter 90 value 82.019316 iter 100 value 81.335431 final value 81.335431 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.819353 iter 10 value 94.066350 iter 20 value 91.256018 iter 30 value 86.118547 iter 40 value 84.423570 iter 50 value 83.136749 iter 60 value 82.859977 iter 70 value 82.424391 iter 80 value 81.981679 iter 90 value 81.203895 iter 100 value 80.763695 final value 80.763695 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 126.889361 iter 10 value 96.108106 iter 20 value 93.835939 iter 30 value 88.917387 iter 40 value 83.168769 iter 50 value 82.580909 iter 60 value 82.153982 iter 70 value 81.474397 iter 80 value 80.805390 iter 90 value 80.639735 iter 100 value 80.628752 final value 80.628752 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 122.626463 iter 10 value 94.640330 iter 20 value 93.835157 iter 30 value 92.043648 iter 40 value 85.903914 iter 50 value 84.185847 iter 60 value 83.329478 iter 70 value 81.466011 iter 80 value 80.470555 iter 90 value 80.000889 iter 100 value 79.931317 final value 79.931317 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 107.274717 iter 10 value 95.259393 iter 20 value 94.697680 iter 30 value 94.243366 iter 40 value 89.386244 iter 50 value 88.165336 iter 60 value 86.849686 iter 70 value 86.276718 iter 80 value 86.118390 iter 90 value 85.656196 iter 100 value 85.048610 final value 85.048610 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 107.692960 iter 10 value 94.059331 iter 20 value 93.430054 iter 30 value 87.551063 iter 40 value 83.571533 iter 50 value 82.012379 iter 60 value 81.273197 iter 70 value 80.520749 iter 80 value 80.375387 iter 90 value 80.196385 iter 100 value 80.146405 final value 80.146405 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.204635 iter 10 value 94.154097 iter 20 value 90.929543 iter 30 value 87.912890 iter 40 value 82.603768 iter 50 value 81.264585 iter 60 value 80.867173 iter 70 value 80.707303 iter 80 value 80.424229 iter 90 value 80.226543 iter 100 value 80.181862 final value 80.181862 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 123.390036 iter 10 value 98.318661 iter 20 value 87.942813 iter 30 value 85.725062 iter 40 value 84.122388 iter 50 value 83.257632 iter 60 value 83.026433 iter 70 value 82.975792 iter 80 value 81.929172 iter 90 value 81.103553 iter 100 value 80.291126 final value 80.291126 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.824311 iter 10 value 94.054906 iter 20 value 93.895680 final value 93.582756 converged Fitting Repeat 2 # weights: 103 initial value 96.099950 iter 10 value 94.054695 iter 20 value 94.043709 iter 30 value 89.255465 iter 40 value 84.989471 iter 50 value 84.853070 iter 60 value 84.784446 iter 70 value 84.776158 iter 80 value 84.764810 iter 90 value 84.763312 iter 100 value 84.762373 final value 84.762373 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 95.773147 final value 93.630139 converged Fitting Repeat 4 # weights: 103 initial value 97.661212 final value 94.054700 converged Fitting Repeat 5 # weights: 103 initial value 94.587473 final value 94.054536 converged Fitting Repeat 1 # weights: 305 initial value 108.841279 iter 10 value 94.057219 iter 20 value 93.605416 final value 93.582705 converged Fitting Repeat 2 # weights: 305 initial value 119.769922 iter 10 value 94.058851 iter 20 value 94.046373 iter 30 value 93.605658 iter 40 value 91.459314 iter 50 value 84.235915 iter 60 value 83.327361 iter 70 value 83.318009 iter 80 value 83.317290 iter 90 value 83.316325 final value 83.316324 converged Fitting Repeat 3 # weights: 305 initial value 95.850043 iter 10 value 93.587672 iter 20 value 93.583830 iter 30 value 93.469006 iter 40 value 87.841184 final value 87.763408 converged Fitting Repeat 4 # weights: 305 initial value 102.560374 iter 10 value 93.633367 iter 20 value 87.457565 iter 30 value 87.398151 iter 40 value 87.151890 iter 50 value 87.079387 final value 87.079308 converged Fitting Repeat 5 # weights: 305 initial value 96.177803 iter 10 value 94.057782 iter 20 value 94.038406 iter 30 value 93.585255 iter 40 value 93.583657 iter 50 value 93.575566 iter 60 value 87.960680 iter 70 value 85.858288 iter 80 value 85.851629 iter 90 value 85.600163 iter 100 value 85.474589 final value 85.474589 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 114.257278 iter 10 value 92.343209 iter 20 value 91.557459 iter 30 value 91.556950 iter 40 value 91.531174 iter 50 value 91.443212 iter 60 value 91.356561 iter 70 value 91.353905 iter 80 value 91.348817 iter 90 value 89.486746 iter 100 value 82.940992 final value 82.940992 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 99.134003 iter 10 value 93.337935 iter 20 value 93.337234 iter 30 value 93.329591 iter 40 value 93.326182 iter 50 value 92.330791 iter 60 value 92.221798 iter 70 value 92.221036 iter 70 value 92.221035 final value 92.221032 converged Fitting Repeat 3 # weights: 507 initial value 109.489330 iter 10 value 93.634664 iter 20 value 93.590428 iter 30 value 93.565462 iter 40 value 89.608361 iter 50 value 88.902571 iter 60 value 88.901472 iter 70 value 88.900437 iter 80 value 87.094434 iter 90 value 87.025360 iter 100 value 86.973410 final value 86.973410 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 100.632249 iter 10 value 93.590882 iter 20 value 93.582944 iter 30 value 93.579305 final value 93.579251 converged Fitting Repeat 5 # weights: 507 initial value 103.281769 iter 10 value 93.590875 iter 20 value 93.532621 iter 30 value 87.201652 iter 40 value 86.637016 iter 50 value 86.620863 iter 60 value 86.618233 iter 70 value 86.616846 iter 80 value 86.396505 iter 90 value 86.317410 iter 100 value 86.143466 final value 86.143466 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.834454 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 103.461766 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 94.527649 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 107.200100 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 100.983955 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 111.191523 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 108.213026 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 124.675253 iter 10 value 94.484210 iter 10 value 94.484210 iter 10 value 94.484210 final value 94.484210 converged Fitting Repeat 4 # weights: 305 initial value 98.921891 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 101.444843 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 95.993925 iter 10 value 93.001892 iter 20 value 92.991351 final value 92.991335 converged Fitting Repeat 2 # weights: 507 initial value 96.998623 iter 10 value 91.737421 iter 20 value 87.890368 iter 30 value 86.314749 final value 86.312634 converged Fitting Repeat 3 # weights: 507 initial value 99.171098 final value 94.466823 converged Fitting Repeat 4 # weights: 507 initial value 100.072569 iter 10 value 91.867555 iter 20 value 85.125225 iter 30 value 84.878839 final value 84.877158 converged Fitting Repeat 5 # weights: 507 initial value 120.449659 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 102.415528 iter 10 value 93.728730 iter 20 value 88.242493 iter 30 value 86.946278 iter 40 value 85.747052 iter 50 value 85.568089 iter 60 value 85.542489 final value 85.533591 converged Fitting Repeat 2 # weights: 103 initial value 106.085032 iter 10 value 94.400308 iter 20 value 90.340468 iter 30 value 87.221874 iter 40 value 85.843954 iter 50 value 84.955935 iter 60 value 84.419628 iter 70 value 84.164224 final value 84.163888 converged Fitting Repeat 3 # weights: 103 initial value 97.665232 iter 10 value 94.451904 iter 20 value 94.272996 iter 30 value 94.233593 iter 40 value 88.508588 iter 50 value 87.299096 iter 60 value 86.827461 iter 70 value 86.407409 iter 80 value 85.852928 iter 90 value 85.813037 final value 85.813030 converged Fitting Repeat 4 # weights: 103 initial value 99.455759 iter 10 value 94.480138 iter 20 value 91.523056 iter 30 value 87.599822 iter 40 value 86.021740 iter 50 value 85.819263 final value 85.813030 converged Fitting Repeat 5 # weights: 103 initial value 98.064030 iter 10 value 94.440932 iter 20 value 90.842096 iter 30 value 90.044642 iter 40 value 88.494185 iter 50 value 87.027509 iter 60 value 86.901229 iter 70 value 86.691314 iter 80 value 86.448811 final value 86.448741 converged Fitting Repeat 1 # weights: 305 initial value 123.851119 iter 10 value 95.515500 iter 20 value 92.697753 iter 30 value 88.179932 iter 40 value 86.820171 iter 50 value 84.940509 iter 60 value 84.102550 iter 70 value 83.359220 iter 80 value 83.207912 iter 90 value 83.150951 iter 100 value 83.125450 final value 83.125450 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 100.187643 iter 10 value 94.483235 iter 20 value 89.270230 iter 30 value 88.771080 iter 40 value 88.464916 iter 50 value 87.277232 iter 60 value 86.751445 iter 70 value 86.336312 iter 80 value 84.273064 iter 90 value 84.042191 iter 100 value 83.025358 final value 83.025358 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.703259 iter 10 value 94.495805 iter 20 value 93.894345 iter 30 value 92.964406 iter 40 value 91.189443 iter 50 value 88.869796 iter 60 value 84.569405 iter 70 value 84.471259 iter 80 value 83.783560 iter 90 value 83.226962 iter 100 value 83.019283 final value 83.019283 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.378458 iter 10 value 94.516735 iter 20 value 94.129803 iter 30 value 92.691748 iter 40 value 89.814670 iter 50 value 85.476734 iter 60 value 83.619235 iter 70 value 83.054649 iter 80 value 82.877815 iter 90 value 82.692745 iter 100 value 82.656717 final value 82.656717 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.313181 iter 10 value 94.593660 iter 20 value 93.477500 iter 30 value 90.457184 iter 40 value 87.273074 iter 50 value 85.595523 iter 60 value 85.288963 iter 70 value 85.036627 iter 80 value 85.007550 iter 90 value 84.860347 iter 100 value 84.333579 final value 84.333579 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 119.692478 iter 10 value 94.592687 iter 20 value 90.143741 iter 30 value 86.582045 iter 40 value 86.310268 iter 50 value 85.543129 iter 60 value 85.429304 iter 70 value 85.282404 iter 80 value 84.310960 iter 90 value 83.414773 iter 100 value 83.235699 final value 83.235699 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 104.551592 iter 10 value 93.106684 iter 20 value 92.516676 iter 30 value 90.655642 iter 40 value 89.511475 iter 50 value 84.219786 iter 60 value 83.354375 iter 70 value 82.764981 iter 80 value 82.529306 iter 90 value 82.306795 iter 100 value 82.276449 final value 82.276449 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 122.185781 iter 10 value 98.316597 iter 20 value 96.998695 iter 30 value 93.280233 iter 40 value 90.174735 iter 50 value 87.067732 iter 60 value 86.526952 iter 70 value 86.041828 iter 80 value 85.677794 iter 90 value 85.073223 iter 100 value 83.723913 final value 83.723913 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 117.408742 iter 10 value 94.492295 iter 20 value 92.247574 iter 30 value 91.018685 iter 40 value 87.199948 iter 50 value 85.582159 iter 60 value 85.512635 iter 70 value 85.407111 iter 80 value 84.403311 iter 90 value 83.737381 iter 100 value 83.296856 final value 83.296856 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 107.976137 iter 10 value 96.565221 iter 20 value 96.099498 iter 30 value 92.266594 iter 40 value 87.237058 iter 50 value 86.195742 iter 60 value 85.467127 iter 70 value 84.903561 iter 80 value 84.620270 iter 90 value 84.232772 iter 100 value 83.419230 final value 83.419230 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 112.502512 final value 94.468181 converged Fitting Repeat 2 # weights: 103 initial value 105.132377 final value 94.486002 converged Fitting Repeat 3 # weights: 103 initial value 95.561614 iter 10 value 94.485683 iter 20 value 92.724846 iter 30 value 87.545280 iter 40 value 87.544635 iter 50 value 87.462009 iter 60 value 87.213219 iter 70 value 87.213025 iter 70 value 87.213024 iter 70 value 87.213024 final value 87.213024 converged Fitting Repeat 4 # weights: 103 initial value 94.864171 final value 94.468281 converged Fitting Repeat 5 # weights: 103 initial value 96.372959 iter 10 value 94.321725 iter 20 value 94.229142 iter 30 value 89.041534 iter 40 value 86.508863 iter 50 value 85.918444 iter 60 value 85.849292 iter 70 value 85.849030 iter 80 value 85.424393 iter 90 value 85.099416 final value 85.087146 converged Fitting Repeat 1 # weights: 305 initial value 114.883577 iter 10 value 94.471368 iter 20 value 94.376803 iter 30 value 87.624904 iter 40 value 86.148338 iter 50 value 86.147801 iter 60 value 85.686187 final value 85.395579 converged Fitting Repeat 2 # weights: 305 initial value 97.088106 iter 10 value 94.489064 iter 20 value 92.673872 iter 30 value 88.393168 iter 40 value 88.084838 iter 50 value 88.034836 iter 60 value 85.816351 iter 70 value 85.011731 iter 80 value 85.002593 iter 90 value 85.002082 final value 85.001647 converged Fitting Repeat 3 # weights: 305 initial value 97.362141 iter 10 value 94.471485 iter 20 value 94.303501 iter 30 value 88.510769 iter 40 value 87.471354 final value 87.033264 converged Fitting Repeat 4 # weights: 305 initial value 95.609336 iter 10 value 92.611859 iter 20 value 84.889813 iter 30 value 84.880172 iter 40 value 84.778176 iter 50 value 84.746173 final value 84.746150 converged Fitting Repeat 5 # weights: 305 initial value 111.465205 iter 10 value 94.488483 iter 20 value 94.476560 iter 30 value 87.399247 iter 40 value 86.464727 iter 50 value 86.265162 iter 60 value 86.124485 iter 70 value 86.120912 iter 80 value 86.097651 iter 90 value 86.090208 iter 100 value 85.391206 final value 85.391206 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 105.870371 iter 10 value 94.492247 iter 20 value 94.454513 iter 30 value 87.209474 iter 40 value 87.159808 iter 50 value 87.159085 iter 60 value 87.156590 iter 70 value 86.784547 final value 86.729180 converged Fitting Repeat 2 # weights: 507 initial value 99.922677 iter 10 value 94.474695 iter 20 value 93.923973 iter 30 value 87.513559 iter 40 value 87.513279 iter 50 value 86.007710 iter 60 value 86.006778 iter 70 value 85.702321 iter 80 value 83.927559 iter 90 value 83.030752 iter 100 value 82.578815 final value 82.578815 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 121.237006 iter 10 value 94.474990 iter 20 value 94.315619 final value 94.313455 converged Fitting Repeat 4 # weights: 507 initial value 106.725741 iter 10 value 90.679645 iter 20 value 88.420329 iter 30 value 88.309404 iter 40 value 87.576877 iter 50 value 86.770738 iter 60 value 86.259601 iter 70 value 85.073110 iter 80 value 85.068053 final value 85.067120 converged Fitting Repeat 5 # weights: 507 initial value 139.753668 iter 10 value 94.492931 iter 20 value 94.413683 iter 30 value 93.000756 iter 40 value 92.157635 iter 50 value 92.157188 final value 92.156848 converged Fitting Repeat 1 # weights: 103 initial value 96.248039 iter 10 value 94.484212 iter 10 value 94.484211 iter 10 value 94.484211 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 100.910627 final value 94.165117 converged Fitting Repeat 3 # weights: 103 initial value 97.008604 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 104.829194 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 97.455480 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 103.263101 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 102.303294 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 106.514554 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 111.311291 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 102.093136 final value 94.165116 converged Fitting Repeat 1 # weights: 507 initial value 103.309312 iter 10 value 94.286492 iter 20 value 93.721415 iter 30 value 93.369511 iter 40 value 85.520844 iter 50 value 82.992218 iter 60 value 82.617806 iter 70 value 82.509755 iter 80 value 82.506876 final value 82.506856 converged Fitting Repeat 2 # weights: 507 initial value 113.037401 iter 10 value 93.860656 final value 92.376405 converged Fitting Repeat 3 # weights: 507 initial value 96.875252 iter 10 value 84.025224 iter 20 value 81.674869 iter 30 value 80.150541 iter 40 value 79.912187 iter 50 value 79.715592 iter 60 value 79.644492 iter 70 value 79.442439 iter 80 value 79.430922 iter 90 value 79.429954 iter 100 value 79.429860 final value 79.429860 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 100.727267 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 100.182133 final value 94.275362 converged Fitting Repeat 1 # weights: 103 initial value 104.859563 iter 10 value 94.488577 final value 94.488559 converged Fitting Repeat 2 # weights: 103 initial value 108.758736 iter 10 value 94.079835 iter 20 value 89.587798 iter 30 value 89.278502 iter 40 value 88.585090 iter 50 value 88.556502 final value 88.556487 converged Fitting Repeat 3 # weights: 103 initial value 100.164136 iter 10 value 94.488789 iter 20 value 94.329712 iter 30 value 94.329185 iter 40 value 94.210003 iter 50 value 93.696995 iter 60 value 90.096367 iter 70 value 89.562595 iter 80 value 88.882351 iter 90 value 88.801302 final value 88.801280 converged Fitting Repeat 4 # weights: 103 initial value 96.988477 iter 10 value 91.892490 iter 20 value 89.810468 iter 30 value 89.699621 iter 40 value 88.803737 iter 50 value 88.801488 final value 88.801270 converged Fitting Repeat 5 # weights: 103 initial value 96.351950 iter 10 value 94.016166 iter 20 value 83.478780 iter 30 value 81.220280 iter 40 value 80.836079 iter 50 value 79.810623 iter 60 value 79.542757 iter 70 value 79.428608 iter 80 value 79.304886 iter 90 value 79.196320 final value 79.184095 converged Fitting Repeat 1 # weights: 305 initial value 99.849246 iter 10 value 94.114869 iter 20 value 82.230670 iter 30 value 81.540424 iter 40 value 79.762450 iter 50 value 78.792648 iter 60 value 78.603173 iter 70 value 78.264160 iter 80 value 78.010658 iter 90 value 77.867441 iter 100 value 77.812132 final value 77.812132 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.562244 iter 10 value 94.336813 iter 20 value 85.294587 iter 30 value 82.249829 iter 40 value 80.343786 iter 50 value 79.809758 iter 60 value 79.466246 iter 70 value 79.149568 iter 80 value 78.124074 iter 90 value 77.842133 iter 100 value 77.695456 final value 77.695456 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 112.662163 iter 10 value 93.283624 iter 20 value 91.386640 iter 30 value 89.323745 iter 40 value 82.787821 iter 50 value 80.616569 iter 60 value 79.742216 iter 70 value 79.129859 iter 80 value 78.181759 iter 90 value 78.088119 iter 100 value 78.067543 final value 78.067543 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 116.232525 iter 10 value 98.730524 iter 20 value 87.986767 iter 30 value 87.094891 iter 40 value 86.537015 iter 50 value 83.787724 iter 60 value 80.025349 iter 70 value 78.726560 iter 80 value 78.420255 iter 90 value 78.168768 iter 100 value 78.087111 final value 78.087111 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.904755 iter 10 value 94.598437 iter 20 value 94.155871 iter 30 value 89.602599 iter 40 value 86.639186 iter 50 value 84.418595 iter 60 value 80.762625 iter 70 value 80.509815 iter 80 value 80.461264 iter 90 value 80.178526 iter 100 value 79.479941 final value 79.479941 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 119.069914 iter 10 value 94.208132 iter 20 value 88.421003 iter 30 value 81.950530 iter 40 value 80.692291 iter 50 value 80.574670 iter 60 value 80.224986 iter 70 value 79.956652 iter 80 value 79.796848 iter 90 value 79.744359 iter 100 value 79.457572 final value 79.457572 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 121.660758 iter 10 value 94.052871 iter 20 value 88.680953 iter 30 value 83.743318 iter 40 value 81.141307 iter 50 value 79.666649 iter 60 value 79.168478 iter 70 value 79.048230 iter 80 value 78.814065 iter 90 value 78.009611 iter 100 value 77.675135 final value 77.675135 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.283906 iter 10 value 94.406766 iter 20 value 90.311306 iter 30 value 87.819445 iter 40 value 80.026355 iter 50 value 79.326867 iter 60 value 78.806152 iter 70 value 78.663592 iter 80 value 78.499095 iter 90 value 78.379073 iter 100 value 78.281814 final value 78.281814 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 122.623510 iter 10 value 95.700245 iter 20 value 94.707880 iter 30 value 93.136754 iter 40 value 83.972266 iter 50 value 82.470859 iter 60 value 82.036053 iter 70 value 81.213991 iter 80 value 80.184577 iter 90 value 78.912137 iter 100 value 78.579427 final value 78.579427 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 111.657892 iter 10 value 96.311809 iter 20 value 94.274962 iter 30 value 92.511559 iter 40 value 83.483337 iter 50 value 81.548979 iter 60 value 79.581152 iter 70 value 78.483340 iter 80 value 78.362894 iter 90 value 78.202875 iter 100 value 78.141218 final value 78.141218 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.292505 final value 94.485908 converged Fitting Repeat 2 # weights: 103 initial value 96.294969 final value 94.485927 converged Fitting Repeat 3 # weights: 103 initial value 98.491933 iter 10 value 94.485833 iter 20 value 94.484203 iter 30 value 93.786379 iter 40 value 91.501590 iter 50 value 89.436124 iter 60 value 89.434467 iter 70 value 87.335578 iter 80 value 87.334409 final value 87.334170 converged Fitting Repeat 4 # weights: 103 initial value 99.616307 final value 94.485859 converged Fitting Repeat 5 # weights: 103 initial value 99.410998 final value 94.485455 converged Fitting Repeat 1 # weights: 305 initial value 104.865029 iter 10 value 94.488494 iter 20 value 94.332557 iter 30 value 80.880607 iter 40 value 80.678099 iter 50 value 80.677368 iter 60 value 80.675327 iter 70 value 80.672598 iter 80 value 80.667833 iter 90 value 80.027351 final value 80.010955 converged Fitting Repeat 2 # weights: 305 initial value 96.418829 iter 10 value 94.171163 iter 20 value 94.145641 iter 30 value 94.094260 final value 94.094182 converged Fitting Repeat 3 # weights: 305 initial value 95.800114 iter 10 value 94.488183 iter 20 value 94.460057 iter 30 value 83.583155 iter 40 value 83.537585 iter 50 value 83.531039 iter 60 value 82.772874 iter 70 value 82.723416 iter 80 value 82.722434 final value 82.722375 converged Fitting Repeat 4 # weights: 305 initial value 98.377366 iter 10 value 94.488652 iter 20 value 94.410951 final value 94.275606 converged Fitting Repeat 5 # weights: 305 initial value 109.502724 iter 10 value 94.485690 iter 20 value 94.177824 iter 30 value 90.058741 iter 40 value 89.688209 iter 50 value 89.666906 iter 60 value 88.039764 iter 70 value 87.336470 iter 80 value 86.180561 iter 90 value 80.892664 iter 100 value 80.467044 final value 80.467044 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 102.713797 iter 10 value 91.211785 iter 20 value 91.184703 iter 30 value 89.999126 iter 40 value 89.985055 iter 50 value 89.888950 iter 60 value 85.268718 iter 70 value 79.596050 iter 80 value 79.579112 iter 90 value 78.219435 iter 100 value 78.187826 final value 78.187826 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 95.719033 iter 10 value 94.486238 iter 20 value 93.974330 iter 30 value 89.795015 iter 40 value 89.792996 iter 50 value 89.792759 iter 60 value 89.791994 iter 70 value 89.791505 iter 80 value 89.528448 iter 90 value 88.592261 iter 100 value 88.591918 final value 88.591918 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.077830 iter 10 value 94.493363 iter 20 value 94.469726 iter 30 value 89.540251 iter 40 value 87.349212 iter 50 value 87.334658 final value 87.334632 converged Fitting Repeat 4 # weights: 507 initial value 122.169568 iter 10 value 94.492628 iter 20 value 94.422213 iter 30 value 90.542461 iter 40 value 88.865258 iter 50 value 88.684798 final value 88.684792 converged Fitting Repeat 5 # weights: 507 initial value 106.596688 iter 10 value 94.274478 iter 20 value 94.241181 iter 30 value 94.101667 iter 40 value 94.094447 iter 50 value 94.094194 final value 94.094192 converged Fitting Repeat 1 # weights: 103 initial value 97.786783 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 102.841275 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 101.775447 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 96.240174 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 97.763107 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 118.153238 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 97.772583 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 99.741804 iter 10 value 94.006931 iter 20 value 93.975536 final value 93.963025 converged Fitting Repeat 4 # weights: 305 initial value 96.634479 iter 10 value 93.963025 iter 10 value 93.963025 iter 10 value 93.963025 final value 93.963025 converged Fitting Repeat 5 # weights: 305 initial value 102.891355 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 106.718608 final value 93.969040 converged Fitting Repeat 2 # weights: 507 initial value 111.578584 iter 10 value 91.988505 iter 20 value 90.874960 final value 90.874747 converged Fitting Repeat 3 # weights: 507 initial value 106.544382 final value 94.008696 converged Fitting Repeat 4 # weights: 507 initial value 110.957627 iter 10 value 94.008697 iter 10 value 94.008696 iter 10 value 94.008696 final value 94.008696 converged Fitting Repeat 5 # weights: 507 initial value 96.236226 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 96.236753 iter 10 value 94.040549 iter 20 value 90.339506 iter 30 value 85.446727 iter 40 value 84.438599 iter 50 value 83.322885 iter 60 value 83.175048 iter 70 value 82.367890 iter 80 value 82.240573 iter 90 value 82.031395 final value 82.031165 converged Fitting Repeat 2 # weights: 103 initial value 104.738405 iter 10 value 94.119298 iter 20 value 94.056180 iter 30 value 93.747403 iter 40 value 87.963373 iter 50 value 85.721618 iter 60 value 85.607406 iter 70 value 85.591082 iter 80 value 85.589764 final value 85.589673 converged Fitting Repeat 3 # weights: 103 initial value 101.409236 iter 10 value 94.036749 iter 20 value 89.063634 iter 30 value 88.406540 iter 40 value 85.870585 iter 50 value 84.894765 iter 60 value 84.531116 iter 70 value 84.369502 final value 84.369359 converged Fitting Repeat 4 # weights: 103 initial value 102.914350 iter 10 value 93.574860 iter 20 value 91.520574 iter 30 value 86.057517 iter 40 value 85.576821 iter 50 value 85.091457 iter 60 value 85.075016 final value 85.068155 converged Fitting Repeat 5 # weights: 103 initial value 97.361425 iter 10 value 94.054892 iter 20 value 93.763465 iter 30 value 93.325175 iter 40 value 92.493516 iter 50 value 84.335605 iter 60 value 83.547448 iter 70 value 83.161106 iter 80 value 83.014436 iter 90 value 82.862116 iter 100 value 82.642266 final value 82.642266 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 99.575589 iter 10 value 94.140548 iter 20 value 93.987370 iter 30 value 93.036954 iter 40 value 85.885526 iter 50 value 85.569536 iter 60 value 85.376251 iter 70 value 85.280790 iter 80 value 84.024263 iter 90 value 82.669490 iter 100 value 81.733078 final value 81.733078 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.280045 iter 10 value 94.023203 iter 20 value 92.703163 iter 30 value 91.992696 iter 40 value 90.004987 iter 50 value 85.533656 iter 60 value 85.237236 iter 70 value 85.101690 iter 80 value 84.206530 iter 90 value 82.978103 iter 100 value 82.354854 final value 82.354854 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.260640 iter 10 value 93.974831 iter 20 value 86.054292 iter 30 value 85.768130 iter 40 value 83.601160 iter 50 value 82.649760 iter 60 value 82.391055 iter 70 value 82.249133 iter 80 value 82.191423 iter 90 value 82.189926 iter 100 value 82.185458 final value 82.185458 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 109.787351 iter 10 value 93.689974 iter 20 value 85.906634 iter 30 value 85.484897 iter 40 value 84.820410 iter 50 value 83.190874 iter 60 value 82.828134 iter 70 value 82.608868 iter 80 value 82.407647 iter 90 value 82.298802 iter 100 value 82.222897 final value 82.222897 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 122.184584 iter 10 value 94.061783 iter 20 value 91.238527 iter 30 value 89.513116 iter 40 value 87.426381 iter 50 value 86.773266 iter 60 value 86.057159 iter 70 value 84.645317 iter 80 value 84.259040 iter 90 value 83.970888 iter 100 value 83.061868 final value 83.061868 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 111.137798 iter 10 value 95.240272 iter 20 value 93.861954 iter 30 value 87.736135 iter 40 value 87.064305 iter 50 value 85.900970 iter 60 value 84.888901 iter 70 value 84.204950 iter 80 value 82.512564 iter 90 value 81.105859 iter 100 value 80.784302 final value 80.784302 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 104.269691 iter 10 value 94.178882 iter 20 value 91.113284 iter 30 value 88.188369 iter 40 value 85.488793 iter 50 value 85.369906 iter 60 value 85.235185 iter 70 value 84.996785 iter 80 value 82.670102 iter 90 value 82.173337 iter 100 value 81.788546 final value 81.788546 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 105.835703 iter 10 value 94.738702 iter 20 value 91.117309 iter 30 value 89.078748 iter 40 value 87.557662 iter 50 value 87.071775 iter 60 value 86.880152 iter 70 value 84.357606 iter 80 value 83.240319 iter 90 value 82.587326 iter 100 value 82.263310 final value 82.263310 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.934406 iter 10 value 93.953421 iter 20 value 86.341792 iter 30 value 84.970076 iter 40 value 82.929406 iter 50 value 82.287965 iter 60 value 81.994947 iter 70 value 81.005643 iter 80 value 80.857579 iter 90 value 80.740325 iter 100 value 80.679233 final value 80.679233 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 115.983863 iter 10 value 94.052633 iter 20 value 92.469261 iter 30 value 87.054278 iter 40 value 85.754116 iter 50 value 85.072995 iter 60 value 84.636967 iter 70 value 83.810461 iter 80 value 82.033760 iter 90 value 81.529625 iter 100 value 81.247058 final value 81.247058 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 100.231041 iter 10 value 93.672691 iter 20 value 93.665973 final value 93.665212 converged Fitting Repeat 2 # weights: 103 initial value 95.312000 final value 94.054627 converged Fitting Repeat 3 # weights: 103 initial value 96.363381 iter 10 value 93.724088 iter 20 value 93.666150 iter 30 value 93.664745 iter 40 value 93.501909 iter 50 value 92.156902 iter 60 value 84.804508 iter 70 value 83.504832 iter 80 value 83.489290 iter 90 value 83.474644 iter 100 value 83.474295 final value 83.474295 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 102.655927 final value 94.054585 converged Fitting Repeat 5 # weights: 103 initial value 107.691767 final value 94.054498 converged Fitting Repeat 1 # weights: 305 initial value 99.005908 iter 10 value 94.057287 iter 20 value 93.725195 iter 30 value 84.783377 iter 40 value 84.753473 final value 84.753416 converged Fitting Repeat 2 # weights: 305 initial value 102.065242 iter 10 value 94.057672 iter 20 value 94.052942 iter 20 value 94.052942 iter 20 value 94.052942 final value 94.052942 converged Fitting Repeat 3 # weights: 305 initial value 94.864811 iter 10 value 94.057963 iter 20 value 94.010664 iter 30 value 87.285124 iter 40 value 87.248520 final value 87.248393 converged Fitting Repeat 4 # weights: 305 initial value 94.150439 iter 10 value 89.491012 iter 20 value 87.253179 iter 30 value 87.247364 iter 40 value 85.883785 iter 50 value 84.255228 iter 60 value 84.250110 iter 70 value 84.236323 iter 80 value 84.233164 final value 84.232701 converged Fitting Repeat 5 # weights: 305 initial value 96.433348 iter 10 value 94.058390 iter 20 value 93.625691 iter 30 value 90.872478 iter 40 value 86.365426 iter 50 value 83.687239 iter 60 value 81.295285 iter 70 value 80.470495 iter 80 value 80.457625 iter 90 value 80.456648 iter 100 value 80.455804 final value 80.455804 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 101.792141 iter 10 value 93.972236 iter 20 value 93.970303 iter 30 value 93.322764 iter 40 value 87.949188 iter 50 value 87.873417 final value 87.873131 converged Fitting Repeat 2 # weights: 507 initial value 97.741889 iter 10 value 93.970708 iter 20 value 93.964982 iter 30 value 93.963213 iter 40 value 93.505665 final value 93.496021 converged Fitting Repeat 3 # weights: 507 initial value 113.299470 iter 10 value 92.489681 iter 20 value 87.633157 iter 30 value 87.627362 iter 40 value 84.785387 iter 50 value 84.756131 iter 60 value 84.753831 final value 84.752962 converged Fitting Repeat 4 # weights: 507 initial value 116.602268 iter 10 value 94.060927 iter 20 value 93.573007 iter 30 value 85.831603 iter 40 value 82.406232 iter 50 value 79.794964 iter 60 value 79.668533 iter 70 value 79.594540 iter 80 value 79.526656 iter 90 value 79.523863 iter 100 value 79.521457 final value 79.521457 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.087572 iter 10 value 94.061035 final value 94.053849 converged Fitting Repeat 1 # weights: 103 initial value 99.234322 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 94.523432 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.572801 iter 10 value 93.474561 final value 93.472243 converged Fitting Repeat 4 # weights: 103 initial value 103.344879 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 110.853454 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 95.027527 final value 94.466823 converged Fitting Repeat 2 # weights: 305 initial value 108.998546 final value 94.466823 converged Fitting Repeat 3 # weights: 305 initial value 101.548095 final value 94.466823 converged Fitting Repeat 4 # weights: 305 initial value 110.655473 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 98.086545 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 98.118885 final value 94.466823 converged Fitting Repeat 2 # weights: 507 initial value 100.590890 iter 10 value 94.333577 final value 94.253430 converged Fitting Repeat 3 # weights: 507 initial value 103.905715 final value 94.466823 converged Fitting Repeat 4 # weights: 507 initial value 114.605053 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 99.892200 iter 10 value 94.275362 iter 10 value 94.275362 iter 10 value 94.275362 final value 94.275362 converged Fitting Repeat 1 # weights: 103 initial value 121.416491 iter 10 value 94.489198 iter 20 value 94.428083 iter 30 value 87.116145 iter 40 value 85.928828 iter 50 value 85.636126 iter 60 value 83.106893 iter 70 value 83.001725 iter 80 value 82.979693 iter 90 value 82.780334 iter 100 value 82.679420 final value 82.679420 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 100.069730 iter 10 value 94.509256 iter 20 value 94.477837 iter 30 value 94.341468 iter 40 value 94.326218 iter 50 value 94.317718 iter 60 value 92.185763 iter 70 value 86.242168 iter 80 value 85.458411 iter 90 value 84.594212 iter 100 value 84.334670 final value 84.334670 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 100.275804 iter 10 value 89.076997 iter 20 value 85.773693 iter 30 value 84.444618 iter 40 value 83.476040 iter 50 value 83.198481 iter 60 value 83.171479 final value 83.168007 converged Fitting Repeat 4 # weights: 103 initial value 103.258103 iter 10 value 94.486766 iter 20 value 92.514551 iter 30 value 85.022249 iter 40 value 83.940787 iter 50 value 83.675015 iter 60 value 83.493495 final value 83.490836 converged Fitting Repeat 5 # weights: 103 initial value 104.229803 iter 10 value 94.537626 iter 20 value 94.488797 iter 30 value 94.419838 iter 40 value 87.184420 iter 50 value 83.456251 iter 60 value 82.728457 iter 70 value 82.641070 iter 80 value 82.525198 iter 90 value 82.416900 iter 100 value 81.425031 final value 81.425031 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 125.892088 iter 10 value 94.606099 iter 20 value 84.390005 iter 30 value 83.401703 iter 40 value 81.592155 iter 50 value 80.442246 iter 60 value 79.910855 iter 70 value 79.118913 iter 80 value 79.048675 iter 90 value 78.978952 iter 100 value 78.920571 final value 78.920571 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.796050 iter 10 value 94.404019 iter 20 value 87.902060 iter 30 value 83.922843 iter 40 value 81.709168 iter 50 value 80.451310 iter 60 value 79.667278 iter 70 value 79.510018 iter 80 value 79.326356 iter 90 value 79.239436 iter 100 value 79.186933 final value 79.186933 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.823247 iter 10 value 94.487855 iter 20 value 89.542672 iter 30 value 83.127817 iter 40 value 82.662482 iter 50 value 82.492256 iter 60 value 82.402712 iter 70 value 82.348271 iter 80 value 82.304182 iter 90 value 82.150930 iter 100 value 81.768778 final value 81.768778 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 116.307736 iter 10 value 94.977757 iter 20 value 94.530434 iter 30 value 94.500749 iter 40 value 86.668698 iter 50 value 85.474128 iter 60 value 83.024869 iter 70 value 82.394540 iter 80 value 80.784395 iter 90 value 79.702007 iter 100 value 79.245739 final value 79.245739 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 126.036849 iter 10 value 95.568349 iter 20 value 94.939431 iter 30 value 86.864747 iter 40 value 85.855648 iter 50 value 84.813244 iter 60 value 82.787580 iter 70 value 82.441975 iter 80 value 82.354607 iter 90 value 82.194272 iter 100 value 81.154262 final value 81.154262 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.462120 iter 10 value 94.861207 iter 20 value 92.972202 iter 30 value 85.849700 iter 40 value 83.573122 iter 50 value 81.852287 iter 60 value 80.244937 iter 70 value 79.430593 iter 80 value 79.061271 iter 90 value 79.014894 iter 100 value 79.004283 final value 79.004283 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.053760 iter 10 value 94.751569 iter 20 value 87.655024 iter 30 value 85.001385 iter 40 value 82.540701 iter 50 value 81.758357 iter 60 value 79.607030 iter 70 value 79.079374 iter 80 value 78.842926 iter 90 value 78.453229 iter 100 value 78.321264 final value 78.321264 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 120.716808 iter 10 value 96.157317 iter 20 value 87.823955 iter 30 value 85.716222 iter 40 value 83.732382 iter 50 value 81.771404 iter 60 value 81.468061 iter 70 value 81.275114 iter 80 value 81.091866 iter 90 value 79.665244 iter 100 value 79.123038 final value 79.123038 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.597573 iter 10 value 94.315611 iter 20 value 89.745518 iter 30 value 82.819404 iter 40 value 81.013697 iter 50 value 80.452120 iter 60 value 79.497565 iter 70 value 79.328432 iter 80 value 79.286362 iter 90 value 78.984333 iter 100 value 78.829867 final value 78.829867 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 140.358479 iter 10 value 94.140799 iter 20 value 85.958879 iter 30 value 82.887608 iter 40 value 82.392379 iter 50 value 81.923833 iter 60 value 81.099671 iter 70 value 80.134120 iter 80 value 79.908181 iter 90 value 79.669050 iter 100 value 79.094215 final value 79.094215 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 108.039842 iter 10 value 94.324463 iter 20 value 91.366571 iter 30 value 85.038459 iter 40 value 84.822409 iter 50 value 84.813067 final value 84.813059 converged Fitting Repeat 2 # weights: 103 initial value 98.536002 final value 94.485922 converged Fitting Repeat 3 # weights: 103 initial value 95.171984 final value 94.485849 converged Fitting Repeat 4 # weights: 103 initial value 97.083449 iter 10 value 94.485943 iter 20 value 94.484214 iter 30 value 93.707928 iter 40 value 93.222845 iter 50 value 93.221080 final value 93.218189 converged Fitting Repeat 5 # weights: 103 initial value 103.286158 final value 94.485788 converged Fitting Repeat 1 # weights: 305 initial value 96.501627 iter 10 value 94.108075 iter 20 value 92.918674 iter 30 value 88.062639 iter 40 value 84.851214 iter 50 value 83.143148 iter 60 value 83.112035 iter 70 value 83.104478 iter 80 value 83.096072 iter 90 value 83.094783 iter 100 value 83.093600 final value 83.093600 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.435815 iter 10 value 94.489253 iter 20 value 94.484313 iter 30 value 94.340519 iter 40 value 82.734047 iter 50 value 81.301408 iter 60 value 79.339635 iter 70 value 78.423184 iter 80 value 78.200686 iter 90 value 78.117402 iter 100 value 77.982952 final value 77.982952 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.609368 iter 10 value 94.488627 iter 20 value 94.484184 iter 30 value 93.564410 iter 40 value 92.241010 iter 50 value 92.212806 iter 60 value 91.862753 iter 70 value 91.855985 iter 80 value 91.828877 iter 90 value 91.820850 final value 91.820821 converged Fitting Repeat 4 # weights: 305 initial value 99.920289 iter 10 value 94.489226 iter 20 value 94.484540 iter 30 value 91.139986 iter 40 value 90.928034 iter 50 value 85.532066 iter 60 value 84.477901 iter 70 value 84.477579 iter 80 value 83.410110 iter 90 value 83.000740 final value 83.000594 converged Fitting Repeat 5 # weights: 305 initial value 105.209861 iter 10 value 94.488225 iter 20 value 94.460038 iter 30 value 90.015724 iter 40 value 85.522222 iter 50 value 85.023632 iter 60 value 85.010618 iter 70 value 85.006806 final value 85.005849 converged Fitting Repeat 1 # weights: 507 initial value 119.523579 iter 10 value 94.364435 iter 20 value 94.296975 iter 30 value 94.284638 iter 40 value 94.158057 iter 50 value 94.157529 final value 94.157203 converged Fitting Repeat 2 # weights: 507 initial value 128.722825 iter 10 value 94.474693 iter 20 value 94.170724 iter 30 value 84.584508 iter 40 value 83.763849 iter 50 value 83.284384 iter 60 value 83.276704 final value 83.276700 converged Fitting Repeat 3 # weights: 507 initial value 110.500216 iter 10 value 94.503712 iter 20 value 94.461710 iter 30 value 94.436616 iter 40 value 94.430150 iter 50 value 94.428351 iter 60 value 87.900984 iter 70 value 82.252711 iter 80 value 82.155329 iter 90 value 81.762097 iter 100 value 81.209074 final value 81.209074 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.941830 iter 10 value 92.650210 iter 20 value 91.971666 iter 30 value 91.720537 iter 40 value 91.674166 iter 50 value 91.672637 iter 60 value 91.671586 iter 70 value 91.661085 iter 80 value 91.633458 iter 90 value 91.595449 iter 100 value 91.594784 final value 91.594784 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 99.089806 iter 10 value 93.788029 iter 20 value 93.131014 iter 30 value 93.060980 iter 40 value 93.060137 iter 50 value 92.974092 iter 60 value 87.247057 iter 70 value 84.533044 iter 80 value 82.802292 iter 90 value 80.144737 iter 100 value 78.986962 final value 78.986962 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 129.993858 iter 10 value 117.898795 iter 20 value 117.841425 final value 117.759849 converged Fitting Repeat 2 # weights: 507 initial value 141.386951 iter 10 value 117.737179 iter 20 value 117.732662 iter 30 value 117.720983 iter 40 value 117.568485 iter 50 value 117.555005 final value 117.554805 converged Fitting Repeat 3 # weights: 507 initial value 124.622697 iter 10 value 117.723038 iter 20 value 117.026827 iter 30 value 115.010721 iter 40 value 114.919196 final value 114.727694 converged Fitting Repeat 4 # weights: 507 initial value 138.967911 iter 10 value 117.899678 iter 20 value 117.828581 iter 30 value 107.229427 iter 40 value 104.308506 iter 50 value 102.786015 iter 60 value 102.667874 iter 70 value 102.667040 final value 102.666880 converged Fitting Repeat 5 # weights: 507 initial value 123.120448 iter 10 value 117.553136 iter 20 value 117.545931 iter 30 value 117.005721 iter 40 value 109.078969 iter 50 value 107.497778 iter 60 value 107.369583 iter 70 value 107.368825 final value 107.367620 converged svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Thu Jun 6 00:02:47 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 42.147 2.175 45.441
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 35.325 | 0.587 | 35.914 | |
FreqInteractors | 0.235 | 0.016 | 0.250 | |
calculateAAC | 0.039 | 0.004 | 0.044 | |
calculateAutocor | 0.307 | 0.016 | 0.324 | |
calculateCTDC | 0.082 | 0.000 | 0.082 | |
calculateCTDD | 0.549 | 0.004 | 0.553 | |
calculateCTDT | 0.246 | 0.000 | 0.245 | |
calculateCTriad | 0.382 | 0.023 | 0.406 | |
calculateDC | 0.087 | 0.012 | 0.099 | |
calculateF | 0.315 | 0.001 | 0.315 | |
calculateKSAAP | 0.095 | 0.003 | 0.099 | |
calculateQD_Sm | 1.705 | 0.043 | 1.749 | |
calculateTC | 1.561 | 0.152 | 1.713 | |
calculateTC_Sm | 0.298 | 0.005 | 0.302 | |
corr_plot | 35.212 | 0.315 | 35.531 | |
enrichfindP | 0.538 | 0.020 | 9.280 | |
enrichfind_hp | 0.106 | 0.000 | 1.222 | |
enrichplot | 0.357 | 0.008 | 0.366 | |
filter_missing_values | 0.002 | 0.000 | 0.002 | |
getFASTA | 0.417 | 0.000 | 3.715 | |
getHPI | 0.001 | 0.000 | 0.001 | |
get_negativePPI | 0.001 | 0.001 | 0.002 | |
get_positivePPI | 0.000 | 0.000 | 0.001 | |
impute_missing_data | 0.000 | 0.002 | 0.002 | |
plotPPI | 0.068 | 0.000 | 0.069 | |
pred_ensembel | 13.679 | 0.385 | 10.785 | |
var_imp | 37.031 | 1.032 | 38.065 | |