Back to Mac ARM64 build report for BioC 3.18 |
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This page was generated on 2024-04-18 11:32:15 -0400 (Thu, 18 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1433/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OCplus 1.76.0 (landing page) Alexander Ploner
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the OCplus package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: OCplus |
Version: 1.76.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OCplus.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OCplus_1.76.0.tar.gz |
StartedAt: 2024-04-17 21:40:48 -0400 (Wed, 17 Apr 2024) |
EndedAt: 2024-04-17 21:42:07 -0400 (Wed, 17 Apr 2024) |
EllapsedTime: 79.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OCplus.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OCplus.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OCplus_1.76.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/OCplus.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘OCplus/DESCRIPTION’ ... OK * this is package ‘OCplus’ version ‘1.76.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OCplus’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
OCplus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL OCplus ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘OCplus’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OCplus)
OCplus.Rcheck/OCplus-Ex.timings
name | user | system | elapsed | |
EOC | 0.350 | 0.082 | 0.432 | |
FDR | 0.002 | 0.000 | 0.003 | |
MAsim.smyth | 1.610 | 0.092 | 1.750 | |
OCshow | 0.763 | 0.196 | 0.961 | |
TOC | 0.159 | 0.031 | 0.191 | |
average.fdr | 1.112 | 0.177 | 1.306 | |
fdr1d | 0.495 | 0.080 | 0.582 | |
fdr2d | 0.573 | 0.098 | 0.672 | |
plot.FDR.result | 1.323 | 0.065 | 1.393 | |
plot.fdr1d.result | 0.838 | 0.069 | 0.908 | |
plot.fdr2d.result | 1.398 | 0.098 | 1.513 | |
samplesize | 3.352 | 0.439 | 3.824 | |
smooth1d | 0.024 | 0.009 | 0.035 | |
summary.fdr.result | 0.289 | 0.120 | 0.413 | |
tMixture | 1.339 | 0.335 | 1.697 | |