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This page was generated on 2024-04-17 11:36:52 -0400 (Wed, 17 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4414
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4437
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 951/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCDOC 1.4.1  (landing page)
Maigné Élise
Snapshot Date: 2024-04-15 14:05:01 -0400 (Mon, 15 Apr 2024)
git_url: https://git.bioconductor.org/packages/HiCDOC
git_branch: RELEASE_3_18
git_last_commit: 08dd5c5
git_last_commit_date: 2024-02-19 03:52:31 -0400 (Mon, 19 Feb 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD BIN results for HiCDOC on palomino4


To the developers/maintainers of the HiCDOC package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCDOC.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HiCDOC
Version: 1.4.1
Command: rm -rf HiCDOC.buildbin-libdir && mkdir HiCDOC.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=HiCDOC.buildbin-libdir HiCDOC_1.4.1.tar.gz
StartedAt: 2024-04-16 07:08:18 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 07:09:34 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 76.5 seconds
RetCode: 0
Status:   OK  
PackageFile: HiCDOC_1.4.1.zip
PackageFileSize: 3.267 MiB

Command output

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###
### Running command:
###
###   rm -rf HiCDOC.buildbin-libdir && mkdir HiCDOC.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=HiCDOC.buildbin-libdir HiCDOC_1.4.1.tar.gz
###
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* installing *source* package 'HiCDOC' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c constrainedClustering.cpp -o constrainedClustering.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c parseHiCFile.cpp -o parseHiCFile.o
g++ -shared -s -static-libgcc -o HiCDOC.dll tmp.def RcppExports.o constrainedClustering.o parseHiCFile.o -LF:/biocbuild/bbs-3.18-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/meat/HiCDOC.buildbin-libdir/00LOCK-HiCDOC/00new/HiCDOC/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'HiCDOC' as HiCDOC_1.4.1.zip
* DONE (HiCDOC)