Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-04-17 11:37:30 -0400 (Wed, 17 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 99/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ASpli 2.12.0 (landing page) Ariel Chernomoretz
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the ASpli package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASpli.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ASpli |
Version: 2.12.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ASpli.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ASpli_2.12.0.tar.gz |
StartedAt: 2024-04-15 23:21:26 -0400 (Mon, 15 Apr 2024) |
EndedAt: 2024-04-15 23:48:08 -0400 (Mon, 15 Apr 2024) |
EllapsedTime: 1602.5 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: ASpli.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ASpli.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ASpli_2.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/ASpli.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ASpli/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ASpli’ version ‘2.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ASpli’ can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘ASpli’ See ‘/Users/biocbuild/bbs-3.18-bioc/meat/ASpli.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ASpli-package 165.163 1.112 172.372 exportIntegratedSignals 91.390 0.631 99.683 exportSplicingReports 89.396 0.683 97.598 integrateSignals 86.195 0.392 94.618 splicingReport 84.898 0.772 97.670 jDUreport 83.581 0.818 94.228 jCounts-methods 83.617 0.708 88.807 gbDUreport-method 73.757 0.582 84.069 gbCounts 73.134 0.379 80.289 binGenome 8.205 0.065 9.100 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/Users/biocbuild/bbs-3.18-bioc/meat/ASpli.Rcheck/00check.log’ for details.
ASpli.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ASpli ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘ASpli’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘ASpli’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘ASpli’ ** testing if installed package can be loaded from final location Warning: replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘ASpli’ ** testing if installed package keeps a record of temporary installation path * DONE (ASpli)
ASpli.Rcheck/ASpli-Ex.timings
name | user | system | elapsed | |
ASpli-package | 165.163 | 1.112 | 172.372 | |
DUreport | 0.000 | 0.000 | 0.001 | |
DUreport.norm | 0.000 | 0.001 | 0.000 | |
DUreport.offset | 0.001 | 0.000 | 0.001 | |
DUreportBinSplice-method | 0.001 | 0.001 | 0.001 | |
acc_AS | 0.000 | 0.001 | 0.001 | |
acc_DU | 0.000 | 0.001 | 0.001 | |
acc_counts | 0.001 | 0.001 | 0.001 | |
acc_features | 0.374 | 0.004 | 0.416 | |
binGenome | 8.205 | 0.065 | 9.100 | |
containsJunctions-function | 0.000 | 0.001 | 0.001 | |
example_data | 0.000 | 0.000 | 0.001 | |
exportIntegratedSignals | 91.390 | 0.631 | 99.683 | |
exportSplicingReports | 89.396 | 0.683 | 97.598 | |
filterDU-method | 0.001 | 0.001 | 0.002 | |
filterSignals | 0.000 | 0.000 | 0.001 | |
gbCounts | 73.134 | 0.379 | 80.289 | |
gbDUreport-method | 73.757 | 0.582 | 84.069 | |
getConditions-function | 0.001 | 0.001 | 0.002 | |
integrateSignals | 86.195 | 0.392 | 94.618 | |
jCounts-methods | 83.617 | 0.708 | 88.807 | |
jDUreport | 83.581 | 0.818 | 94.228 | |
junctionDUreport | 0.000 | 0.000 | 0.001 | |
loadBAM | 0.000 | 0.000 | 0.001 | |
mergeBinDUAS-method | 0.000 | 0.001 | 0.002 | |
plotBins | 0.001 | 0.003 | 0.004 | |
plotGenomicRegions | 0.001 | 0.001 | 0.003 | |
rds | 0.000 | 0.001 | 0.001 | |
splicingReport | 84.898 | 0.772 | 97.670 | |
subset-methods | 0.000 | 0.003 | 0.005 | |