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This page was generated on 2023-04-12 10:55:33 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_644.3.0 alpha (2023-04-03 r84154) 4547
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" 4333
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for wppi on nebbiolo1


To the developers/maintainers of the wppi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wppi.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 2189/2207HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
wppi 1.7.0  (landing page)
Ana Galhoz
Snapshot Date: 2023-04-11 14:00:16 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/wppi
git_branch: devel
git_last_commit: c0740ca
git_last_commit_date: 2022-11-01 11:24:35 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  

Summary

Package: wppi
Version: 1.7.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL wppi
StartedAt: 2023-04-11 15:24:44 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 15:24:53 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 8.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL wppi
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘wppi’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:46] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] Contains 1 files.
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:46] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-04-11 15:24:46] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:47] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-04-11 15:24:47] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:47] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-04-11 15:24:47] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:47] [TRACE]   [OmnipathR] Cache locked: FALSE
Note: wrong number of arguments to '/' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:49] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] Contains 1 files.
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:49] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-04-11 15:24:49] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:50] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-04-11 15:24:50] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:50] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-04-11 15:24:50] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:50] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-04-11 15:24:50] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:50] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:52] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Contains 1 files.
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:52] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-04-11 15:24:52] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (wppi)