| Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:38 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the maanova package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maanova.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1085/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Keith Sheppard
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | ERROR | ERROR | skipped | ||||||||||
| Package: maanova |
| Version: 1.69.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL maanova |
| StartedAt: 2023-04-12 01:33:28 -0400 (Wed, 12 Apr 2023) |
| EndedAt: 2023-04-12 01:33:48 -0400 (Wed, 12 Apr 2023) |
| EllapsedTime: 19.6 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL maanova
###
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘maanova’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c makeratio.c -o makeratio.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c masvd.c -o masvd.o
In file included from /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:40,
from masvd.h:1,
from masvd.c:17:
masvd.h:14:15: error: conflicting types for ‘dgesvd_’
14 | void F77_NAME(dgesvd)(const char *jobu, const char *jobvt,
| ^~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:22: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
masvd.h:14:6: note: in expansion of macro ‘F77_NAME’
14 | void F77_NAME(dgesvd)(const char *jobu, const char *jobvt,
| ^~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:348:10: note: previous declaration of ‘dgesvd_’ was here
348 | F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m,
| ^~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:22: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:348:1: note: in expansion of macro ‘F77_NAME’
348 | F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m,
| ^~~~~~~~
masvd.c: In function ‘masvd’:
masvd.c:68:11: error: too few arguments to function ‘dgesdd_’
68 | F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)),
| ^~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:22: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2397:10: note: declared here
2397 | F77_NAME(dgesdd)(const char* jobz,
| ^~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:22: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2397:1: note: in expansion of macro ‘F77_NAME’
2397 | F77_NAME(dgesdd)(const char* jobz,
| ^~~~~~~~
masvd.c:77:11: error: too few arguments to function ‘dgesdd_’
77 | F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)),
| ^~~~~~
masvd.c:77:2: note: in expansion of macro ‘F77_CALL’
77 | F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)),
| ^~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2397:10: note: declared here
2397 | F77_NAME(dgesdd)(const char* jobz,
| ^~~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:22: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2397:1: note: in expansion of macro ‘F77_NAME’
2397 | F77_NAME(dgesdd)(const char* jobz,
| ^~~~~~~~
masvd.c: At top level:
masvd.c:114:2: warning: "/*" within comment [-Wcomment]
114 | /* work on a copy of x */
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masvd.c:154:1: warning: "/*" within comment [-Wcomment]
154 | /*#ifndef IEEE_754
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masvd.c:161:5: warning: "/*" within comment [-Wcomment]
161 | /* work on a copy of x */
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masvd.c:165:2: warning: "/*" within comment [-Wcomment]
165 | /* ask for optimal size of work array */
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masvd.c:189:2: warning: "/*" within comment [-Wcomment]
189 | /* ask for optimal size of work array */
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make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:191: masvd.o] Error 1
ERROR: compilation failed for package ‘maanova’
* removing ‘/home/biocbuild/bbs-3.17-bioc/R/site-library/maanova’