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This page was generated on 2023-04-12 10:55:25 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_644.3.0 alpha (2023-04-03 r84154) 4547
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" 4333
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for geneRxCluster on nebbiolo1


To the developers/maintainers of the geneRxCluster package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/geneRxCluster.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 780/2207HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneRxCluster 1.35.0  (landing page)
Charles Berry
Snapshot Date: 2023-04-11 14:00:16 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/geneRxCluster
git_branch: devel
git_last_commit: cee08aa
git_last_commit_date: 2022-11-01 11:09:05 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  

Summary

Package: geneRxCluster
Version: 1.35.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL geneRxCluster
StartedAt: 2023-04-11 15:05:41 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 15:05:51 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 10.0 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL geneRxCluster
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘geneRxCluster’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c cluster.c -o cluster.o
cluster.c: In function ‘cutptClean_new_elt’:
cluster.c:80:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
   80 |   if (*pvj!=NOTAIL)
      |      ^
cluster.c: In function ‘gRxC_cluster’:
cluster.c:682:2: warning: ‘cutptFunRes’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  682 |  SET_VECTOR_ELT(final,2,cutptFunRes);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o geneRxCluster.so cluster.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-geneRxCluster/00new/geneRxCluster/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneRxCluster)