| Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:24 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the fcScan package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 682/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fcScan 1.13.0 (landing page) Pierre Khoueiry
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||||
| Package: fcScan |
| Version: 1.13.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:fcScan.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings fcScan_1.13.0.tar.gz |
| StartedAt: 2023-04-11 20:16:29 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 20:21:54 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 324.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fcScan.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:fcScan.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings fcScan_1.13.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/fcScan.Rcheck’
* using R version 4.3.0 alpha (2023-04-03 r84154)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘fcScan_vignette.Rmd’ using ‘UTF8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
fcScan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL fcScan ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘fcScan’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fcScan)
fcScan.Rcheck/tests/runTests.Rout
R version 4.3.0 alpha (2023-04-03 r84154)
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: GenomeInfoDb
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.226088 secs
Sites in condition do not match sites in data
3 entries loaded
Running getCluster using 1 threads
Time difference of 0.09718633 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08808374 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.07171512 secs
17 entries loaded
Running getCluster using 1 threads
No cluster found
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1043358 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.0886209 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1025758 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09186864 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1023648 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08202934 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.115499 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.0879395 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.0931499 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.0918231 secs
10 entries loaded
Running getCluster using 1 threads
Time difference of 0.1014786 secs
10 entries loaded
Running getCluster using 1 threads
No cluster found
10 entries loaded
Running getCluster using 1 threads
Time difference of 0.1003954 secs
16 entries loaded
Running getCluster using 1 threads
Time difference of 0.08801579 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.07568455 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1037085 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1001172 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.09143806 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.06423068 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.06076646 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08688164 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08525944 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1060972 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.06355786 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.07282162 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08521676 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08434081 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08280039 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1073878 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1006718 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08740067 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09343004 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1008525 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08731461 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08342719 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1058083 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09971666 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.06361747 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08207321 secs
RUNIT TEST PROTOCOL -- Tue Apr 11 20:21:35 2023
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
16.271 1.056 17.774
fcScan.Rcheck/fcScan-Ex.timings
| name | user | system | elapsed | |
| getCluster | 0.237 | 0.028 | 0.287 | |