Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:26 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the LowMACA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LowMACA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 1073/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
LowMACA 1.29.0 (landing page) Giorgio Melloni
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
Package: LowMACA |
Version: 1.29.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL LowMACA |
StartedAt: 2023-04-11 15:24:33 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 15:25:24 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 51.3 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL LowMACA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘LowMACA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... Can't locate XML/Simple.pm in @INC (you may need to install the XML::Simple module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.34.0 /usr/local/share/perl/5.34.0 /usr/lib/x86_64-linux-gnu/perl5/5.34 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl-base /usr/lib/x86_64-linux-gnu/perl/5.34 /usr/share/perl/5.34 /usr/local/lib/site_perl). BEGIN failed--compilation aborted. Warning in system(paste(perl, "-MXML::Simple -e 1"), intern = TRUE) : running command '/usr/bin/perl -MXML::Simple -e 1' had status 2 Warning in .PerlModuleChecks(stop = FALSE, perl = "perl") : XML::Simple module for perl is not installed. If you don't want to install a local clustal omega and use the web service, XML::Simple is required ** testing if installed package can be loaded from final location Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... Can't locate XML/Simple.pm in @INC (you may need to install the XML::Simple module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.34.0 /usr/local/share/perl/5.34.0 /usr/lib/x86_64-linux-gnu/perl5/5.34 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl-base /usr/lib/x86_64-linux-gnu/perl/5.34 /usr/share/perl/5.34 /usr/local/lib/site_perl). BEGIN failed--compilation aborted. Warning in system(paste(perl, "-MXML::Simple -e 1"), intern = TRUE) : running command '/usr/bin/perl -MXML::Simple -e 1' had status 2 Warning in .PerlModuleChecks(stop = FALSE, perl = "perl") : XML::Simple module for perl is not installed. If you don't want to install a local clustal omega and use the web service, XML::Simple is required ** testing if installed package keeps a record of temporary installation path * DONE (LowMACA)