| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:27 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the distinct package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 536/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| distinct 1.11.0 (landing page) Simone Tiberi
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: distinct |
| Version: 1.11.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL distinct |
| StartedAt: 2022-12-28 16:20:41 -0500 (Wed, 28 Dec 2022) |
| EndedAt: 2022-12-28 16:22:12 -0500 (Wed, 28 Dec 2022) |
| EllapsedTime: 90.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL distinct
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'distinct' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm.cpp -o Perm.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm_covariates.cpp -o Perm_covariates.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast.h:5,
from Perm_covariates.cpp:2:
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
553 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:604: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
604 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:621: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
621 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:639: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
639 | #pragma omp parallel for
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F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:654: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
654 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:669: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
669 | #pragma omp parallel for
|
Perm_covariates.cpp: In function 'arma::vec my_rint_reg(const arma::mat&, const arma::vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)':
Perm_covariates.cpp:189:16: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
189 | for(int i=0;i<p;i++)
| ~^~
Perm_covariates.cpp:210:12: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
210 | while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
| ~~~^~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm_covariates_parallel.cpp -o Perm_covariates_parallel.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast.h:5,
from Perm_covariates_parallel.cpp:2:
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
553 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:604: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
604 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:621: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
621 | #pragma omp parallel for
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F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:639: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
639 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:654: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
654 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:669: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
669 | #pragma omp parallel for
|
Perm_covariates_parallel.cpp: In function 'arma::vec my_rint_reg_parallel(const arma::mat&, const arma::vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)':
Perm_covariates_parallel.cpp:189:16: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
189 | for(int i=0;i<p;i++)
| ~^~
Perm_covariates_parallel.cpp:210:12: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
210 | while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
| ~~~^~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm_parallel.cpp -o Perm_parallel.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -shared -s -static-libgcc -o distinct.dll tmp.def Perm.o Perm_covariates.o Perm_covariates_parallel.o Perm_parallel.o RcppExports.o -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-distinct/00new/distinct/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (distinct)