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This page was generated on 2023-01-02 09:00:51 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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BUILD results for SimBu on palomino5


To the developers/maintainers of the SimBu package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1859/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SimBu 1.1.0  (landing page)
Alexander Dietrich
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/SimBu
git_branch: master
git_last_commit: e23a9b3
git_last_commit_date: 2022-11-01 11:27:23 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: SimBu
Version: 1.1.0
Command: chmod a+r SimBu -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SimBu
StartedAt: 2022-12-28 20:38:34 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 20:39:30 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 55.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r SimBu -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SimBu
###
##############################################################################
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* checking for file 'SimBu/DESCRIPTION' ... OK
* preparing 'SimBu':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'SimBu.Rmd' using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Getting started", and the latter is "Getting started with SimBu". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building 'SimBu.Rmd'

--- re-building 'sfaira_vignette.Rmd' using rmarkdown
--- finished re-building 'sfaira_vignette.Rmd'

--- re-building 'simulator_input_output.Rmd' using rmarkdown
Quitting from lines 95-104 (simulator_input_output.Rmd) 
Error: processing vignette 'simulator_input_output.Rmd' failed with diagnostics:
Cannot find "id" column in cell annotation of h5ad_file_counts.
--- failed re-building 'simulator_input_output.Rmd'

--- re-building 'simulator_scaling_factors.Rmd' using rmarkdown
--- finished re-building 'simulator_scaling_factors.Rmd'

SUMMARY: processing the following file failed:
  'simulator_input_output.Rmd'

Error: Vignette re-building failed.
Execution halted