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### Running command:
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### rm -rf PICS.buildbin-libdir && mkdir PICS.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=PICS.buildbin-libdir PICS_2.43.0.tar.gz
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* installing *source* package 'PICS' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
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** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/x64/include -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pics.c -o pics.o
pics.c: In function 'ECM2':
pics.c:1009:16: warning: variable 'chiSum' set but not used [-Wunused-but-set-variable]
1009 | double chiSum, etaF, etaR, dd, cc;
| ^~~~~~
pics.c: In function 'getInfMat':
pics.c:1633:83: warning: unused variable 'PhiRw' [-Wunused-variable]
1633 | double aNormF, aNormR, bNormF, bNormR, P0F=1, P0R=1, PhiF, PhiR, PhiFw, PhiRw, wPjF, wPjR;
| ^~~~~
pics.c:1633:76: warning: unused variable 'PhiFw' [-Wunused-variable]
1633 | double aNormF, aNormR, bNormF, bNormR, P0F=1, P0R=1, PhiF, PhiR, PhiFw, PhiRw, wPjF, wPjR;
| ^~~~~
pics.c: In function 'mergePeak':
pics.c:1889:11: warning: unused variable 'j' [-Wunused-variable]
1889 | int i=0,j=0,k=0,l=0,kMerge=0,flag=0;
| ^
pics.c:1889:7: warning: unused variable 'i' [-Wunused-variable]
1889 | int i=0,j=0,k=0,l=0,kMerge=0,flag=0;
| ^
pics.c: In function 'BIC':
pics.c:1307:13: warning: 'penalty' may be used uninitialized [-Wmaybe-uninitialized]
1307 | bic = logDensityMix(yF, w, muF, sigmaSqF, K, NF) + logDensityMix(yR, w, muR, sigmaSqR, K,NR) - penalty;
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pics.c:1275:42: note: 'penalty' was declared here
1275 | double bic, tmp, muF[K], muR[K], penalty, distance;
| ^~~~~~~
pics.c: In function 'fitModelK':
pics.c:421:25: warning: 'firstFit' may be used uninitialized [-Wmaybe-uninitialized]
421 | SEXP ans, temp, firstFit;
| ^~~~~~~~
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/x64/include -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c segment.c -o segment.o
segment.c: In function 'getDensity':
segment.c:1494:19: warning: variable 'chr' set but not used [-Wunused-but-set-variable]
1494 | SEXP ans, x, y, chr, names;
| ^~~
segment.c:1490:8: warning: unused variable 'filter1' [-Wunused-variable]
1490 | SEXP filter1;
| ^~~~~~~
segment.c:1489:11: warning: unused variable 'muFilter' [-Wunused-variable]
1489 | double *muFilter, *deltaFilter, *sFFilter, *sRFilter, *seFilter, *seFilterF, *seFilterR, *scoreFilter, *score;
| ^~~~~~~~
gcc -shared -s -static-libgcc -o PICS.dll tmp.def pics.o segment.o -lws2_32 -L/x64/lib -lgsl -lgslcblas -lm -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/PICS.buildbin-libdir/00LOCK-PICS/00new/PICS/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'PICS' as PICS_2.43.0.zip
* DONE (PICS)