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This page was generated on 2023-01-02 09:00:27 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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BUILD BIN results for DNAcopy on palomino5


To the developers/maintainers of the DNAcopy package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 549/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DNAcopy 1.73.0  (landing page)
Venkatraman E. Seshan
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/DNAcopy
git_branch: master
git_last_commit: 0d6c719
git_last_commit_date: 2022-11-01 10:37:18 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: DNAcopy
Version: 1.73.0
Command: rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=DNAcopy.buildbin-libdir DNAcopy_1.73.0.tar.gz
StartedAt: 2022-12-29 05:05:15 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 05:05:26 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 10.7 seconds
RetCode: 0
Status:   OK  
PackageFile: DNAcopy_1.73.0.zip
PackageFileSize: 553.5 KiB

Command output

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### Running command:
###
###   rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=DNAcopy.buildbin-libdir DNAcopy_1.73.0.tar.gz
###
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* installing *source* package 'DNAcopy' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
using Fortran compiler: 'GNU Fortran (GCC) 12.2.0'
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c cbsWtstats.f -o cbsWtstats.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c cbststats.f -o cbststats.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c changepoints-wtd.f -o changepoints-wtd.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c changepoints.f -o changepoints.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c esegment.f -o esegment.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c flchoose.c -o flchoose.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c fphyper.c -o fphyper.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c fpnorm.c -o fpnorm.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c getbdry.f -o getbdry.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c prune.f -o prune.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c rshared.c -o rshared.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c segmentp.f -o segmentp.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c smoothCNA.f -o smoothCNA.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c tailprobs.f -o tailprobs.o
gcc -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -lgfortran -lm -lquadmath -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/DNAcopy.buildbin-libdir/00LOCK-DNAcopy/00new/DNAcopy/libs/x64
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'DNAcopy' as DNAcopy_1.73.0.zip
* DONE (DNAcopy)