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This page was generated on 2023-01-02 09:00:24 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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BUILD results for CopywriteR on palomino5


To the developers/maintainers of the CopywriteR package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 406/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CopywriteR 2.31.0  (landing page)
Oscar Krijgsman
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/CopywriteR
git_branch: master
git_last_commit: c911960
git_last_commit_date: 2022-11-01 11:11:29 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: CopywriteR
Version: 2.31.0
Command: chmod a+r CopywriteR -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CopywriteR
StartedAt: 2022-12-28 17:24:27 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 17:25:43 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 75.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r CopywriteR -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CopywriteR
###
##############################################################################
##############################################################################


* checking for file 'CopywriteR/DESCRIPTION' ... OK
* preparing 'CopywriteR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CopywriteR.Rnw' using Sweave
Loading required package: BiocParallel
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  pseudoinverse used at 0.979
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  neighborhood radius 0.001
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  reciprocal condition number  0
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  There are other near singularities as well. 1e-06

Error: processing vignette 'CopywriteR.Rnw' failed with diagnostics:
 chunk 10 (label = CopywriteR) 
Error in value[[3L]](cond) : 
  The GC-content and mappability normalization did not work due to a
  failure to calculate loesses. This can generally be solved by using
  larger bin sizes. Stopping execution of the remaining part of the
  script...

--- failed re-building 'CopywriteR.Rnw'

SUMMARY: processing the following file failed:
  'CopywriteR.Rnw'

Error: Vignette re-building failed.
Execution halted