Back to Build/check report for BioC 3.16 experimental data
ABCDEFGHIJKLMNOPQRSTUVWX[Y]Z

This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for yeastRNASeq on nebbiolo2


To the developers/maintainers of the yeastRNASeq package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 415/416HostnameOS / ArchINSTALLBUILDCHECK
yeastRNASeq 0.36.0  (landing page)
J. Bullard
Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/yeastRNASeq
git_branch: RELEASE_3_16
git_last_commit: f915531
git_last_commit_date: 2022-11-01 10:45:06 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: yeastRNASeq
Version: 0.36.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:yeastRNASeq.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings yeastRNASeq_0.36.0.tar.gz
StartedAt: 2023-04-11 12:29:21 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 12:33:19 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 237.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: yeastRNASeq.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:yeastRNASeq.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings yeastRNASeq_0.36.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/yeastRNASeq.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘yeastRNASeq/DESCRIPTION’ ... OK
* this is package ‘yeastRNASeq’ version ‘0.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘yeastRNASeq’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 313.6Mb
  sub-directories of 1Mb or more:
    data    62.7Mb
    reads  250.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                    old_size new_size compress
  geneLevelData.rda     68Kb     43Kb    bzip2
  yeastAligned.rda    62.6Mb   44.5Mb       xz
  yeastAnno.rda         80Kb     57Kb       xz
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘yeastRNASeq.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/yeastRNASeq.Rcheck/00check.log’
for details.



Installation output

yeastRNASeq.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL yeastRNASeq
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘yeastRNASeq’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (yeastRNASeq)

Tests output


Example timings