Back to Multiple platform build/check report for BioC 3.16:   simplified   long
ABCDEFGHIJKLMNOP[Q]RSTUVWXYZ

This page was generated on 2023-04-12 11:05:46 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for qckitfastq on palomino4


To the developers/maintainers of the qckitfastq package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qckitfastq.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1558/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qckitfastq 1.14.0  (landing page)
August Guang
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/qckitfastq
git_branch: RELEASE_3_16
git_last_commit: 49d700a
git_last_commit_date: 2022-11-01 11:19:24 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: qckitfastq
Version: 1.14.0
Command: chmod a+r qckitfastq -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data qckitfastq
StartedAt: 2023-04-10 20:49:02 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 20:49:51 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 49.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r qckitfastq -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data qckitfastq
###
##############################################################################
##############################################################################


* checking for file 'qckitfastq/DESCRIPTION' ... OK
* preparing 'qckitfastq':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'vignette-qckitfastq.Rmd' using rmarkdown
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
! LaTeX Error: File `tabu.sty' not found.

! Emergency stop.
<read *> 

! pdflatex: major issue: So far, you have not checked for updates as a MiKTeX user.

Error: processing vignette 'vignette-qckitfastq.Rmd' failed with diagnostics:
LaTeX failed to compile F:/biocbuild/bbs-3.16-bioc/tmpdir/RtmpYJCboY/Rbuild18346ac724c3/qckitfastq/vignettes/vignette-qckitfastq.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See vignette-qckitfastq.log for more info.
--- failed re-building 'vignette-qckitfastq.Rmd'

SUMMARY: processing the following file failed:
  'vignette-qckitfastq.Rmd'

Error: Vignette re-building failed.
Execution halted