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This page was generated on 2023-04-12 11:06:15 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for mitoClone2 on lconway


To the developers/maintainers of the mitoClone2 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mitoClone2.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1229/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mitoClone2 1.4.0  (landing page)
Benjamin Story
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/mitoClone2
git_branch: RELEASE_3_16
git_last_commit: 77f24af
git_last_commit_date: 2022-11-01 11:25:23 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: mitoClone2
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mitoClone2
StartedAt: 2023-04-10 15:32:44 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 15:33:50 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 66.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mitoClone2
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’
* installing *source* package ‘mitoClone2’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -D_FILE_OFFSET_BITS=64 ../inst/SCITEpkg/*.cpp -o scite
../inst/SCITEpkg/mcmcBinTreeMove.cpp:75:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
}
^
1 warning generated.
mkdir -p "/Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-mitoClone2/00new/mitoClone2/SCITE/"
cp scite "/Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-mitoClone2/00new/mitoClone2/SCITE/"
rm scite
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhtslib/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c bam2R_10x.cpp -o bam2R_10x.o
bam2R_10x.cpp:6:2: warning: '/*' within block comment [-Wcomment]
 /**************************************************************************************
 ^
bam2R_10x.cpp:8:1: warning: '/*' within block comment [-Wcomment]
/**********************************************************************
^
bam2R_10x.cpp:75:10: warning: unused variable 'bc_absent' [-Wunused-variable]
            int bc_absent;
                ^
bam2R_10x.cpp:158:16: warning: unused variable 'iter' [-Wunused-variable]
    hts_itr_t *iter = NULL;
               ^
bam2R_10x.cpp:161:9: warning: unused variable 'c' [-Wunused-variable]
    int c = 0;
        ^
5 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mitoClone2.so bam2R_10x.o /Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhtslib/usrlib/libhts.a -lcurl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-mitoClone2/00new/mitoClone2/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mitoClone2)