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This page was generated on 2023-04-12 11:06:14 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for metabCombiner on lconway


To the developers/maintainers of the metabCombiner package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metabCombiner.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1139/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabCombiner 1.8.0  (landing page)
Hani Habra
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/metabCombiner
git_branch: RELEASE_3_16
git_last_commit: 6a66b0a
git_last_commit_date: 2022-11-01 11:23:12 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: metabCombiner
Version: 1.8.0
Command: rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metabCombiner_1.8.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R metabCombiner.buildbin-libdir
StartedAt: 2023-04-10 23:50:58 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 23:51:22 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 23.9 seconds
RetCode: 0
Status:   OK  
PackageFile: metabCombiner_1.8.0.tgz
PackageFileSize: 2.889 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metabCombiner_1.8.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R metabCombiner.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=metabCombiner.buildbin-libdir metabCombiner_1.8.0.tar.gz'
>>>>>>> 

* installing *source* package ‘metabCombiner’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c binByMZ.c -o binByMZ.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c findDuplicates.c -o findDuplicates.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c labelRows.c -o labelRows.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c metabCombiner_init.c -o metabCombiner_init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c resolveRows.c -o resolveRows.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c selectAnchors.c -o selectAnchors.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c write2file.c -o write2file.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o metabCombiner.so binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o resolveRows.o selectAnchors.o write2file.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/metabCombiner.buildbin-libdir/00LOCK-metabCombiner/00new/metabCombiner/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metabCombiner)


>>>>>>> 
>>>>>>> FIXING LINKS FOR metabCombiner.buildbin-libdir/metabCombiner/libs/metabCombiner.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "metabCombiner.buildbin-libdir/metabCombiner/libs/metabCombiner.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "metabCombiner.buildbin-libdir/metabCombiner/libs/metabCombiner.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "metabCombiner.buildbin-libdir/metabCombiner/libs/metabCombiner.so"