Anand Mayakonda
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/maftools |
| git_branch: RELEASE_3_16 |
| git_last_commit: 50c4d4c |
| git_last_commit_date: 2022-11-01 11:14:05 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:39 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the maftools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maftools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1080/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maftools 2.14.0 (landing page) Anand Mayakonda
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: maftools |
| Version: 2.14.0 |
| Command: rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=maftools.buildbin-libdir maftools_2.14.0.tar.gz |
| StartedAt: 2023-04-11 08:14:36 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 08:15:15 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 39.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: maftools_2.14.0.zip |
| PackageFileSize: 12.42 MiB |
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### Running command:
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### rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=maftools.buildbin-libdir maftools_2.14.0.tar.gz
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* installing *source* package 'maftools' ...
** using staged installation
** libs
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ntcounts.c -o ntcounts.o
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c snpcounts.c -o snpcounts.o
snpcounts.c: In function 'snpcounts':
snpcounts.c:56:26: warning: passing argument 1 of 'countlines' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
56 | int nloci = countlines(bedfile);
| ^~~~~~~
snpcounts.c:13:22: note: expected 'char *' but argument is of type 'const char *'
13 | int countlines(char *filename){
| ~~~~~~^~~~~~~~
snpcounts.c:56:7: warning: unused variable 'nloci' [-Wunused-variable]
56 | int nloci = countlines(bedfile);
| ^~~~~
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/zlibbioc/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c somaticfreq.c -o somaticfreq.o
gcc -shared -s -static-libgcc -o maftools.dll tmp.def ntcounts.o snpcounts.o somaticfreq.o F:/biocbuild/bbs-3.16-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -lz -lm -lbz2 -llzma -lcurl -lidn2 -lunistring -liconv -lssl -lcrypto -lcrypt32 -lwsock32 -lwldap32 -lssh2 -lgcrypt -lgpg-error -lws2_32 -lzstd -lregex -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/maftools.buildbin-libdir/00LOCK-maftools/00new/maftools/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'maftools' as maftools_2.14.0.zip
* DONE (maftools)