##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL iClusterPlus
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
* installing *source* package 'iClusterPlus' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c iClusterBayes.c -o iClusterBayes.o
iClusterBayes.c: In function 'mcmcBayes':
iClusterBayes.c:1212:28: warning: variable 'Zdraw' set but not used [-Wunused-but-set-variable]
 1212 |   int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
      |                            ^~~~~
iClusterBayes.c:1212:20: warning: variable 'Zburnin' set but not used [-Wunused-but-set-variable]
 1212 |   int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
      |                    ^~~~~~~
iClusterBayes.c:1446:13: warning: 'gb4' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1446 |     gb4[ID] = b4[ID]*gamma4[j];
      |     ~~~~~~~~^~~~~~~~~~~~~~~~~~
iClusterBayes.c:1431:13: warning: 'gb3' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1431 |     gb3[ID] = b3[ID]*gamma3[j];
      |     ~~~~~~~~^~~~~~~~~~~~~~~~~~
iClusterBayes.c:1368:6: warning: 'gb2' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1368 |      mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1369 |         &ty0,&p0,a0,gb0,con0,cat0,sigma0,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1370 |         &ty1,&p1,a1,gb1,con1,cat1,sigma1,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1371 |         &ty2,&p2,a2,gb2,con2,cat2,sigma2,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1372 |         &ty3,&p3,a3,gb3,con3,cat3,sigma3,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1373 |         &ty4,&p4,a4,gb4,con4,cat4,sigma4,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1374 |         &ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iClusterBayes.c:1368:6: warning: 'gb1' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1368:6: warning: 'gb0' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1461:13: warning: 'gb5' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1461 |     gb5[ID] = b5[ID]*gamma5[j];
      |     ~~~~~~~~^~~~~~~~~~~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c iClusterPlus.c -o iClusterPlus.o
gfortran  -fno-optimize-sibling-calls -fdefault-real-8 -ffixed-form   -O2  -mfpmath=sse -msse2 -mstackrealign  -c  newGLMnet.f90 -o newGLMnet.o
gcc -shared -s -static-libgcc -o iClusterPlus.dll tmp.def iClusterBayes.o iClusterPlus.o newGLMnet.o -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -lgfortran -lm -lquadmath -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-iClusterPlus/00new/iClusterPlus/libs/x64
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iClusterPlus)