##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf fastseg.buildbin-libdir && mkdir fastseg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fastseg_1.44.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R fastseg.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=fastseg.buildbin-libdir fastseg_1.44.0.tar.gz'
>>>>>>> 

* installing *source* package ‘fastseg’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_fastseg.c -o R_init_fastseg.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c segment.cpp -o segment.o
segment.cpp:62:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
        double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                                     ^
segment.cpp:60:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
        double globalMean,globalSd,diff,M2,globalVariance;
                          ^
segment.cpp:61:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
        double oldStatistic, meanLeft,meanRight,varLeft,varRight;
               ^
segment.cpp:65:9: warning: unused variable 'Rf_beta' [-Wunused-variable]
        double beta,nn;
               ^
/Library/Frameworks/R.framework/Resources/include/Rmath.h:210:15: note: expanded from macro 'beta'
#define beta            Rf_beta
                        ^
segment.cpp:63:40: warning: variable 'maxIdx' set but not used [-Wunused-but-set-variable]
        double newPValue, maxPValue,oldPValue,maxIdx;
                                              ^
5 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp:61:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
        double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                                     ^
segmentCyberT.cpp:59:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
        double globalMean,globalSd,diff,M2,globalVariance;
                          ^
segmentCyberT.cpp:60:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
        double oldStatistic,meanLeft,meanRight,varLeft,varRight;
               ^
segmentCyberT.cpp:63:50: warning: unused variable 'Rf_beta' [-Wunused-variable]
        double newStatisticBptLeft,newStatisticBptRight,beta,nn;
                                                        ^
/Library/Frameworks/R.framework/Resources/include/Rmath.h:210:15: note: expanded from macro 'beta'
#define beta            Rf_beta
                        ^
4 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fastseg.so R_init_fastseg.o segment.o segmentCyberT.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/fastseg.buildbin-libdir/00LOCK-fastseg/00new/fastseg/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastseg)


>>>>>>> 
>>>>>>> FIXING LINKS FOR fastseg.buildbin-libdir/fastseg/libs/fastseg.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "fastseg.buildbin-libdir/fastseg/libs/fastseg.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "fastseg.buildbin-libdir/fastseg/libs/fastseg.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "fastseg.buildbin-libdir/fastseg/libs/fastseg.so"