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This page was generated on 2023-04-12 11:06:01 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for bridge on lconway


To the developers/maintainers of the bridge package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bridge.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 226/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bridge 1.62.0  (landing page)
Raphael Gottardo
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/bridge
git_branch: RELEASE_3_16
git_last_commit: 1e5a52f
git_last_commit_date: 2022-11-01 10:39:18 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: bridge
Version: 1.62.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL bridge
StartedAt: 2023-04-10 15:04:17 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 15:04:23 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 6.0 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL bridge
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’
* installing *source* package ‘bridge’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c:36:7: warning: unused variable 'old_model' [-Wunused-variable]
  int old_model;
      ^
bridge2.affy.c:37:7: warning: unused variable 'count_model' [-Wunused-variable]
  int count_model=0;
      ^
bridge2.affy.c:302:3: error: implicit declaration of function 'dirichlet' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
  dirichlet(gamma, 2, w);
  ^
bridge2.affy.c:302:3: note: did you mean 'dirichlet2'?
bridge2.affy.c:10:6: note: 'dirichlet2' declared here
void dirichlet2(double *gamma, int n, double *w);
     ^
bridge2.affy.c:282:10: warning: unused variable 'w_new' [-Wunused-variable]
  double w_new[2];
         ^
3 warnings and 1 error generated.
make: *** [bridge2.affy.o] Error 1
ERROR: compilation failed for package ‘bridge’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/bridge’