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This page was generated on 2023-04-12 11:06:21 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for QSutils on lconway


To the developers/maintainers of the QSutils package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/QSutils.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1569/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QSutils 1.16.0  (landing page)
Mercedes Guerrero-Murillo
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/QSutils
git_branch: RELEASE_3_16
git_last_commit: 5eb0dc4
git_last_commit_date: 2022-11-01 11:18:42 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: QSutils
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:QSutils.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings QSutils_1.16.0.tar.gz
StartedAt: 2023-04-10 22:02:39 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 22:03:54 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 74.8 seconds
RetCode: 0
Status:   OK  
CheckDir: QSutils.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:QSutils.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings QSutils_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/QSutils.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘QSutils/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘QSutils’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘QSutils’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

QSutils.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL QSutils
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’
* installing *source* package ‘QSutils’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (QSutils)

Tests output


Example timings

QSutils.Rcheck/QSutils-Ex.timings

nameusersystemelapsed
Collapse0.1050.0120.117
ConsSeq0.0190.0020.022
CorrectGapsAndNs0.0050.0010.006
DBrule0.0370.0050.044
DNA.dist0.0050.0020.007
DSFT0.0040.0010.005
Diverge0.0020.0010.003
DottedAlignment0.0080.0020.009
FAD0.0050.0010.007
FreqMat0.0130.0040.017
GenerateVars0.0030.0010.004
GenotypeStandards_A-H.fas0.0070.0020.008
GetInfProfile0.0350.0030.038
GetQSData0.5950.0460.644
GetRandomSeq000
GiniSimpson0.0010.0000.001
HCq0.0040.0000.004
Hill0.0030.0000.003
IntersectStrandHpls0.0560.0030.062
MutationFreq0.4290.0500.481
MutsTbl0.0100.0020.012
NucleotideDiversity0.0070.0010.008
PolyDist0.0170.0010.019
Rao0.0090.0010.010
ReadAmplSeqs0.0210.0010.023
Renyi0.0020.0010.003
ReportVariants0.0110.0010.012
SegSites0.0070.0010.008
Shannon000
SortByMutations0.1730.0160.190
SummaryMuts0.0100.0010.011
TotalMutations0.0100.0010.010
Toy.GapsAndNs.fna0.0340.0020.036
ToyData_10_50_1000.fna0.0220.0020.023
ToyData_FWReads.fna0.0540.0080.062
ToyData_RVReads.fna0.0530.0020.056
UniqueMutations0.0070.0010.007
Unknown-Genotype.fna0.0070.0010.008
fn.ab0.0020.0010.003
geom.series0.0020.0000.002