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This page was generated on 2023-04-12 11:05:35 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for GSVA on palomino4


To the developers/maintainers of the GSVA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSVA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 877/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSVA 1.46.0  (landing page)
Robert Castelo
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/GSVA
git_branch: RELEASE_3_16
git_last_commit: 4036d9f
git_last_commit_date: 2022-11-01 11:05:54 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GSVA
Version: 1.46.0
Command: rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=GSVA.buildbin-libdir GSVA_1.46.0.tar.gz
StartedAt: 2023-04-11 08:07:05 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 08:07:45 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 39.9 seconds
RetCode: 0
Status:   OK  
PackageFile: GSVA_1.46.0.zip
PackageFileSize: 1.499 MiB

Command output

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###
### Running command:
###
###   rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=GSVA.buildbin-libdir GSVA_1.46.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'GSVA' ...
** using staged installation
** libs
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c kernel_estimation.c -o kernel_estimation.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c ks_test.c -o ks_test.o
ks_test.c: In function 'ks_sample':
ks_test.c:24:9: warning: unused variable 'mx_value' [-Wunused-variable]
   24 |  double mx_value = 0.0;
      |         ^~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c register_cmethods.c -o register_cmethods.o
gcc -shared -s -static-libgcc -o GSVA.dll tmp.def kernel_estimation.o ks_test.o register_cmethods.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/GSVA.buildbin-libdir/00LOCK-GSVA/00new/GSVA/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GSVA' as GSVA_1.46.0.zip
* DONE (GSVA)