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This page was generated on 2023-04-12 11:05:03 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for DNAcopy on nebbiolo2


To the developers/maintainers of the DNAcopy package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DNAcopy.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 560/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DNAcopy 1.72.3  (landing page)
Venkatraman E. Seshan
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/DNAcopy
git_branch: RELEASE_3_16
git_last_commit: 29b7915
git_last_commit_date: 2023-01-19 11:16:15 -0400 (Thu, 19 Jan 2023)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DNAcopy
Version: 1.72.3
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL DNAcopy
StartedAt: 2023-04-10 15:06:46 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 15:06:54 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 8.0 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL DNAcopy
###
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* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘DNAcopy’ ...
** using staged installation
** libs
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f:283:0:

  283 |       iseg(2) = tmaxj
      | 
Warning: ‘tmaxj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
cbsWtstats.f:282:0:

  282 |       iseg(1) = tmaxi
      | 
Warning: ‘tmaxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c cbststats.f -o cbststats.o
cbststats.f:258:0:

  258 |                      tmaxj = sxmxi + i2j
      | 
Warning: ‘sxmxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c changepoints.f -o changepoints.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c esegment.f -o esegment.o
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c flchoose.c -o flchoose.o
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c fphyper.c -o fphyper.o
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c fpnorm.c -o fpnorm.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c getbdry.f -o getbdry.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c prune.f -o prune.o
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c rshared.c -o rshared.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c segmentp.f -o segmentp.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c smoothCNA.f -o smoothCNA.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c tailprobs.f -o tailprobs.o
gcc -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.16-bioc/R/site-library/00LOCK-DNAcopy/00new/DNAcopy/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DNAcopy)